View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17440_low_2 (Length: 436)
Name: NF17440_low_2
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17440_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 9217213 - 9216793
Alignment:
| Q |
16 |
catatttaaaaagagtgattctacaagacctcatatttgagagcatcaaactctaaaatttattatttgaggggttcaactagtaacaatttagaattaa |
115 |
Q |
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| T |
9217213 |
catatttaaaaagagtgattctacaagacctcatatttgagagcatcaaactctaaaatttattatttgaggggttcaactagtaacaatttagaattaa |
9217114 |
T |
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| Q |
116 |
aaatatagattgaaggtgtttaagtggcgaaatataataatggagttgtcaagttcataatnnnnnnngctaataaaacaaactgtccacggcaaaaaat |
215 |
Q |
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| T |
9217113 |
aaatatagattgaaggtgtttaagtggcgaaatataataatggagttgtcaagttcataataaaaaaagctaataaaacaaactgtccacggcaaaaaat |
9217014 |
T |
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| Q |
216 |
taagttttctgagaagcattttaaaattcattattcttagactgaagatttattttggttattcacaannnnnnnnctgggtcaagttagtccccgatat |
315 |
Q |
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| T |
9217013 |
taagttttctgagaagcattttaaaattcattattcttagactgaagatttattttggttattcacaattttttttatggttcaagttagtccccgataa |
9216914 |
T |
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| Q |
316 |
aaatggaatctaacgttctatatgacatatttatctcaagaaaaaattagtgttcgcttcagtgtatcataggaattaatttgtacccagtattaaaaca |
415 |
Q |
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|||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||| |||| | |
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| T |
9216913 |
aaatagaatctaacgttgtatatgacatttttatatcaagaaaaaattagtgttcgattcagtataacataggaattaatttgtacctagtatgaaaata |
9216814 |
T |
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| Q |
416 |
ctaatgactaaatggatattc |
436 |
Q |
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| T |
9216813 |
ctaatgactaaatggatattc |
9216793 |
T |
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