View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17440_low_3 (Length: 310)

Name: NF17440_low_3
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17440_low_3
NF17440_low_3
[»] chr5 (2 HSPs)
chr5 (56-297)||(43469075-43469317)
chr5 (15-55)||(43468998-43469038)
[»] chr1 (2 HSPs)
chr1 (56-297)||(46566931-46567172)
chr1 (15-55)||(46567209-46567249)
[»] chr7 (2 HSPs)
chr7 (56-297)||(10645581-10645822)
chr7 (15-55)||(10645504-10645544)
[»] chr4 (2 HSPs)
chr4 (56-297)||(23537693-23537934)
chr4 (24-55)||(23537625-23537656)
[»] chr2 (2 HSPs)
chr2 (105-189)||(28001264-28001348)
chr2 (234-271)||(28001168-28001205)
[»] scaffold0007 (1 HSPs)
scaffold0007 (105-189)||(267499-267583)
[»] chr3 (2 HSPs)
chr3 (105-189)||(29134797-29134881)
chr3 (234-271)||(29134701-29134738)
[»] chr8 (3 HSPs)
chr8 (70-189)||(29323334-29323453)
chr8 (25-55)||(29323253-29323283)
chr8 (230-271)||(29323508-29323549)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 43469075 - 43469317
Alignment:
Q  56 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgatt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43469075 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagaattgaaaaattgaatggatttagtgagtgatt 43469174  T
Q  156 gtgatgataatacccatgatatcagttctaaatactgatatagaaatggatggggttttagcatatatatatgccttcgatttagtaagaaaagggta-t 254  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  43469175 gtgatgataatacccatgataacagttctaaatgctgatatagaaatggatggggttttagcatatatacatgccttcgatttagtaagaaaagggtatt 43469274  T
Q  255 ggaaatggagatttatgccttcgattcaaggaaatgaaatatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43469275 ggaaatggagatttatgccttcgattcaaggaaatgaaatatg 43469317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 43468998 - 43469038
Alignment:
Q  15 actgtaaagaaaaaacataaaattcaaagtgattactaaat 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43468998 actgtaaagaaaaaacataaaattcaaagtgattactaaat 43469038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 297
Target Start/End: Complemental strand, 46567172 - 46566931
Alignment:
Q  56 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgatt 155  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46567172 acagaaataccaattaataataattgtaatactgaattgataaaggaaatcacaaaattgaaatgagaattgaaaaattgaatggatttagtgagtgatt 46567073  T
Q  156 gtgatgataatacccatgatatcagttctaaatactgatatagaaatggatggggttttagcatatatatatgccttcgatttagtaagaaaagggtatg 255  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46567072 gtgatgataatactcatgataacagttctaaatactgatatagaaatggatggggttttagcatatatacatgccttcgatttagtaagaaaagggtatg 46566973  T
Q  256 gaaatggagatttatgccttcgattcaaggaaatgaaatatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46566972 gaaatggagatttatgccttcgattcaaggaaatgaaatatg 46566931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 46567249 - 46567209
Alignment:
Q  15 actgtaaagaaaaaacataaaattcaaagtgattactaaat 55  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  46567249 actgtaaagaaaaatcataaaactcaaagtaattactaaat 46567209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 10645581 - 10645822
Alignment:
Q  56 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgatt 155  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10645581 acagaaataccaattaatagtaatcataatgctgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgatt 10645680  T
Q  156 gtgatgataatacccatgatatcagttctaaatactgatatagaaatggatggggttttagcatatatatatgccttcgatttagtaagaaaagggtatg 255  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10645681 gtgatgataatacccatggtattagttctaaatacttatatagaaatgaatggggttttagcatatatacatgccttcgatttagtaagaaaagggtatg 10645780  T
Q  256 gaaatggagatttatgccttcgattcaaggaaatgaaatatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10645781 gaaatggagatttatgccttcgattcaaggaaatgaaatatg 10645822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 10645504 - 10645544
Alignment:
Q  15 actgtaaagaaaaaacataaaattcaaagtgattactaaat 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10645504 actgtaaagaaaaaacataaaattcaaagtgattactaaat 10645544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 23537693 - 23537934
Alignment:
Q  56 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgatt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||    
T  23537693 acagaaataccaattaatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagaattgaaaatttgaatgaatttattgagtgatt 23537792  T
Q  156 gtgatgataatacccatgatatcagttctaaatactgatatagaaatggatggggttttagcatatatatatgccttcgatttagtaagaaaagggtatg 255  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23537793 gtgataataatacccatgatatcagttctaattactgatatagaaatggatggggttttagcatatatacatgccttcgatttagtaagaaaagggtatg 23537892  T
Q  256 gaaatggagatttatgccttcgattcaaggaaatgaaatatg 297  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  23537893 gaaatggagatttatgcctttgattcaaggaaatgaaatatg 23537934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 23537625 - 23537656
Alignment:
Q  24 aaaaaacataaaattcaaagtgattactaaat 55  Q
    ||||||||||||||||||||||||||||||||    
T  23537625 aaaaaacataaaattcaaagtgattactaaat 23537656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 28001348 - 28001264
Alignment:
Q  105 tcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgattgtgatgataatacccatgatatcagttctaaata 189  Q
    ||||||||||||||| ||| | ||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28001348 tcacaaaattgaaatcagaatcgaaaggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaata 28001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 28001205 - 28001168
Alignment:
Q  234 gatttagtaagaaaagggtatggaaatggagatttatg 271  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28001205 gatttagtaagaaaagggtatggaagtggaaatttatg 28001168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 267499 - 267583
Alignment:
Q  105 tcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgattgtgatgataatacccatgatatcagttctaaata 189  Q
    ||||||||||||||| ||| |  |||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  267499 tcacaaaattgaaatcagaatctaaaggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaata 267583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 29134881 - 29134797
Alignment:
Q  105 tcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgattgtgatgataatacccatgatatcagttctaaata 189  Q
    ||||||||||||||| ||| | | ||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  29134881 tcacaaaattgaaatcagaatcggaaggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaata 29134797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 29134738 - 29134701
Alignment:
Q  234 gatttagtaagaaaagggtatggaaatggagatttatg 271  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  29134738 gatttagtaagaaaagggtatggaagtggaaatttatg 29134701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 29323334 - 29323453
Alignment:
Q  70 taatagtaatcgtaatactgaattgataaaggaaatcacaaaattgaaatgagagttgaaaaattgaatggatttagtgagtgattgtgatgataatacc 169  Q
    |||||||||||  |||  ||||| |||||||||||||||||| ||||||| ||| |  |||  ||||||||||||||||||  ||||||||||||| |||    
T  29323334 taatagtaatcacaatcttgaatagataaaggaaatcacaaatttgaaatcagaatcaaaaggttgaatggatttagtgaggtattgtgatgataagacc 29323433  T
Q  170 catgatatcagttctaaata 189  Q
    ||||| |||| |||||||||    
T  29323434 catgaaatcacttctaaata 29323453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 29323253 - 29323283
Alignment:
Q  25 aaaaacataaaattcaaagtgattactaaat 55  Q
    |||||||||||||||||||||||||||||||    
T  29323253 aaaaacataaaattcaaagtgattactaaat 29323283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 29323508 - 29323549
Alignment:
Q  230 cttcgatttagtaagaaaagggtatggaaatggagatttatg 271  Q
    ||| ||||||||||||||| ||||||| ||||||||||||||    
T  29323508 ctttgatttagtaagaaaatggtatggcaatggagatttatg 29323549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University