View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17440_low_8 (Length: 268)
Name: NF17440_low_8
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17440_low_8 |
 |  |
|
| [»] scaffold0035 (1 HSPs) |
 |  |  |
|
| [»] scaffold0090 (1 HSPs) |
 |  |  |
|
| [»] scaffold0485 (1 HSPs) |
 |  |  |
|
| [»] scaffold0222 (1 HSPs) |
 |  |  |
|
| [»] scaffold0220 (1 HSPs) |
 |  |  |
|
| [»] scaffold0566 (1 HSPs) |
 |  |  |
|
| [»] scaffold0026 (1 HSPs) |
 |  |  |
|
| [»] scaffold1184 (1 HSPs) |
 |  |  |
|
| [»] scaffold0113 (1 HSPs) |
 |  |  |
|
| [»] scaffold0012 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 15349494 - 15349253
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
106 |
Q |
| |
|
|||||||| | |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349494 |
cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
15349395 |
T |
 |
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349394 |
aacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg |
15349295 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349294 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
15349253 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 14687428 - 14687181
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
14687428 |
cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagaggagaactattatctaaacttatatactctcactactttgtcatt |
14687329 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
14687328 |
ccttagaacccatgaccctactcacaattaccaatataaatggagaattattagagctaattgtttgattatgctacctaattcggacattactaatccg |
14687229 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14687228 |
gaggcggtggaaaatttgctttatgttggtactaacccacaggtacaa |
14687181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 42711431 - 42711184
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| || ||||||| |||||| |||||| |||||||| || |
|
|
| T |
42711431 |
cttttattgctaagaggtttagggtgagtgtgaatcaaaggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt |
42711332 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
42711331 |
ccttagaacccatgaccatactcataattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccg |
42711232 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42711231 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
42711184 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 11498112 - 11498023
Alignment:
| Q |
158 |
taattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
11498112 |
taattgcttgattattctacctaattcaaatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca |
11498023 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 45240404 - 45240267
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaa-ttgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | ||| | | || ||||| |||||||| |||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
45240404 |
catggcccttctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccggaggtggta |
45240305 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
45240304 |
gaaaacttggtttatgttggcactaacccacaggtaca |
45240267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 18290748 - 18290824
Alignment:
| Q |
171 |
attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| | ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
18290748 |
attctacctaattcagatattactaatccggaggtgatagaaaacttggtttatgttggcactaacccacaggtaca |
18290824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 10629417 - 10629551
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
||||| |||| ||||||||| ||||||||| | ||| | | || ||||||| ||||| |||||||||||||| || |||||||||||| ||| ||| |
|
|
| T |
10629417 |
ccatggcccttctcacaattcccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggcggta |
10629516 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
10629517 |
gaaaact---tttatgttggcactaacccacaggtaca |
10629551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 11918184 - 11918125
Alignment:
| Q |
171 |
attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggt |
230 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
11918184 |
attctacctaatccggacataactaacccgaaggtggtggaaaaattgttttatgttggt |
11918125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 540409 - 540168
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
106 |
Q |
| |
|
|||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540409 |
cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
540310 |
T |
 |
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
540309 |
aacccatgaccctactcacaattaccaatatgaaaggagaatcattaaagctaattgtttgattattctacctaattcggacattactaatccggaggtg |
540210 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540209 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
540168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 16327423 - 16327176
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||| || |
|
|
| T |
16327423 |
cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactttgtcctt |
16327324 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16327323 |
ccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattactaatccg |
16327224 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16327223 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
16327176 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 9581460 - 9581707
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||| || |
|
|
| T |
9581460 |
cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt |
9581559 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| | |
|
|
| T |
9581560 |
ccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcggacattactaatctg |
9581659 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9581660 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
9581707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 9729312 - 9729559
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||| || |
|
|
| T |
9729312 |
cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt |
9729411 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
9729412 |
ccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcagacattactaatccg |
9729511 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9729512 |
gaggtggtggaaaatttgctttatgttggtactaatccacaggtacaa |
9729559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 4311310 - 4311532
Alignment:
| Q |
32 |
gagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctactcac |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||||| |||| |||||| |||||||| || |||| |||||||| |||||||||| |
|
|
| T |
4311310 |
gagtgtgaatcaagagatcaagaggatagaggggaactattatctagacttatatactctcactactttgtcctttcttagaacccatggccctactcac |
4311409 |
T |
 |
| Q |
126 |
aattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatg |
225 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4311410 |
aattaccaatatgaatggagaattattagagctaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttacg |
4311509 |
T |
 |
| Q |
226 |
ttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
4311510 |
ttggtactaacccacatgtacaa |
4311532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 8783724 - 8783498
Alignment:
| Q |
28 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac |
121 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| | ||||||||||||| |||| |||||| |||||| | ||||||| |||||||| |||||| |
|
|
| T |
8783724 |
gggtgagtgtgaatcaatggatcaaggggatagaggggaactattatctagacttatatactctcactactttgcccttccttacaacccatggccctac |
8783625 |
T |
 |
| Q |
122 |
tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt |
221 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||| || ||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8783624 |
tcacaattacaaatatgaaaggagaattattacagataattttttgattattctccctaattcggacataactaatccggaggtggtggaaaatttgctt |
8783525 |
T |
 |
| Q |
222 |
tatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
8783524 |
tatgttggtactaacccacatgtacaa |
8783498 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 14223306 - 14223144
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
14223306 |
cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggaaagaggagaactattatctaaacttatatactctcactactttgtcatt |
14223207 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattg |
163 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
14223206 |
ccttaaagcccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattg |
14223144 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 23513736 - 23513873
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
||||| |||| |||||||||||| |||||| | ||| | | || ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23513736 |
ccatggcccttctcacaattacctatatgagtggagagtcaataatgctaattacttgattattctacctaattcggacattactaatccggaggtggta |
23513835 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
23513836 |
gaaaactttgtttatgttggcactaacccacaggtaca |
23513873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 5395811 - 5395944
Alignment:
| Q |
114 |
gaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaa |
213 |
Q |
| |
|
|||||| || ||||||||||| |||| | |||| | | || ||||||| ||||| |||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
5395811 |
gacccttctaacaattaccaaaatgagtggagcgtcaataatgctaatttcttgattattctacctaattcagatattactaatccggaggtggtagaaa |
5395910 |
T |
 |
| Q |
214 |
atttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
5395911 |
acttggtttatgttggcactaacccacaggtaca |
5395944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 4462244 - 4462117
Alignment:
| Q |
120 |
actcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgc |
219 |
Q |
| |
|
||||||||| |||||||||| | || || ||||||||| |||| |||| |||||||||||| || ||| ||||| ||| |||||||||||||||||| |
|
|
| T |
4462244 |
actcacaatgaccaatatgattagaaaatcattagagctcattgtttgattattctacctaatccgttcataactaacccgaaggtggtggaaaatttgc |
4462145 |
T |
 |
| Q |
220 |
tttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||||||||||||||| |||||| |
|
|
| T |
4462144 |
tttatattggtactaacccactggtaca |
4462117 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 13741088 - 13741225
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | ||| | | || | ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13741088 |
ccatggcccttctcacaattaccaatatgagtggagagtcaataatgataattgcttgattattctacctaattcggacattactaattcggaggtggta |
13741187 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| | |||||||||| ||||| ||||||||||| |
|
|
| T |
13741188 |
gaaaactatgtttatgttggcactaatccacaggtaca |
13741225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 12565670 - 12565807
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
||||| |||| || |||||||||||||||| | ||| | | || ||||||| ||||| ||| ||||||||| || ||||||||| |||||||||| |
|
|
| T |
12565670 |
ccatggcccttctaacaattaccaatatgagtggagagtcaataatgctaatttcttgattatttaacctaattcagatattactaattcggaggtggta |
12565769 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
12565770 |
gaaaacttggtttatgttggtactaacccaccggtaca |
12565807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 10439888 - 10439748
Alignment:
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| | ||| | | || | ||||| ||||| |||||||||||||| || |||||||| | | ||||| |
|
|
| T |
10439888 |
aacccatagcccttctcacaattaccaatatgagtggagagtcaataatgataatttcttgattattctacctaattcagatattactaagctgaaggtg |
10439789 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|| ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
10439788 |
gtagaaaacttggtttatgttggcactaacccacaggtaca |
10439748 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 27045431 - 27045672
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
106 |
Q |
| |
|
|||||||| | |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045431 |
cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
27045530 |
T |
 |
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045531 |
aacccatgaccctactcacaattaccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg |
27045630 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045631 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
27045672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 22626567 - 22626469
Alignment:
| Q |
116 |
ccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaa |
214 |
Q |
| |
|
|||| ||||||||||||||||||| | ||| | | || ||||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
22626567 |
cccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatccggtggtggtagaaaa |
22626469 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 21785925 - 21785853
Alignment:
| Q |
172 |
ttctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
21785925 |
ttctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca |
21785853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 6813448 - 6813667
Alignment:
| Q |
29 |
ggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaaaacccatgaccctactcacaat |
128 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6813448 |
ggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaaaaaccatgactctactcacaat |
6813547 |
T |
 |
| Q |
129 |
taccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttg |
228 |
Q |
| |
|
|||||||||| || ||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813548 |
taccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttg |
6813647 |
T |
 |
| Q |
229 |
gtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6813648 |
gtactaacccacaggtacaa |
6813667 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 12778161 - 12777913
Alignment:
| Q |
6 |
ccttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcat |
99 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || || ||||||| |||||| | |||| |||||||| | |
|
|
| T |
12778161 |
ccttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaattattatccaaacttatttactctcactactttgtcct |
12778062 |
T |
 |
| Q |
100 |
tccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatcc |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||| | |
|
|
| T |
12778061 |
tccttagaacccatgaccctactcacaattatcaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaattc |
12777962 |
T |
 |
| Q |
200 |
ggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12777961 |
ggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
12777913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 15024282 - 15024508
Alignment:
| Q |
28 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
15024282 |
gggtgagtgtgaatcaagggatcaagaggatagaggggtactattatctatacttatatactctcactactttgtccttccttagaacccatgaccctac |
15024381 |
T |
 |
| Q |
122 |
tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt |
221 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||||||| || | |||||||||||| | ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
15024382 |
tcacaattaccaatatgaatggagaattaatagagctaattgttttattattctacctaatccagacataactaatccggaggtggtggaaaatttgcat |
15024481 |
T |
 |
| Q |
222 |
tatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||| ||||| |||||| |
|
|
| T |
15024482 |
tatgttggtactaatccacatgtacaa |
15024508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20562017 - 20562153
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | ||| | | || |||||| ||||| |||||||||||||| || ||||||||| |||||||||| | |
|
|
| T |
20562017 |
catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag |
20562116 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| | | ||| |||||| ||||||||||||||||| |
|
|
| T |
20562117 |
aaaactaggtttgtgttggcactaacccacaggtaca |
20562153 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20564325 - 20564461
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | ||| | | || |||||| ||||| |||||||||||||| || ||||||||| |||||||||| | |
|
|
| T |
20564325 |
catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag |
20564424 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| | | ||| |||||| ||||||||||||||||| |
|
|
| T |
20564425 |
aaaactaggtttgtgttggcactaacccacaggtaca |
20564461 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 13090305 - 13090217
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||||||||||| ||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
13090305 |
gctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca |
13090217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20559709 - 20559845
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | ||| | | || |||||| ||||| |||||||||||||| || ||||||||| |||||||||| | |
|
|
| T |
20559709 |
catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag |
20559808 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| | | ||| |||||| |||||||||||| |||| |
|
|
| T |
20559809 |
aaaactaggtttgtgttggcactaacccacagataca |
20559845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 9362455 - 9362367
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| | |||||||||||| ||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
9362455 |
gctaatttcttgattattctacctaattcaaatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca |
9362367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 13096427 - 13096514
Alignment:
| Q |
157 |
ctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||||| ||||| |||||||||||||| || |||||||||||| ||||||| ||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
13096427 |
ctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttgacactaacccacaggtaca |
13096514 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 3246968 - 3246922
Alignment:
| Q |
202 |
aggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
3246968 |
aggtggtggaaaatttgttttatttttgtactaacccacaggtacaa |
3246922 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 22063161 - 22062920
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
106 |
Q |
| |
|
|||||||| | |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063161 |
cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa |
22063062 |
T |
 |
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
|| ||||||| ||||||||||||||||| ||| || ||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063061 |
aaaccatgactctactcacaattaccaacatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg |
22062962 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22062961 |
gtggaaaatttgctttatgttggtactaacccacaggtacaa |
22062920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 18189116 - 18188979
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||| | | || ||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
18189116 |
ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggataatactaatccggaggtggta |
18189017 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
18189016 |
gaaaacttggtttatgttggcactaacccacaggtaca |
18188979 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 19587194 - 19586983
Alignment:
| Q |
28 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
19587194 |
gggtgagtctgaatcaagggatcaagaggatagagaggaactattatctacacttatatactctcactactttgtccttccttagaacccatggacctac |
19587095 |
T |
 |
| Q |
122 |
tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt |
221 |
Q |
| |
|
| |||||||||||||| || ||| ||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
19587094 |
ttacaattaccaatataaacggagaattattagagctaattgtttgattattctacc---------------taatctggaggtggtggaaaatttgatt |
19587010 |
T |
 |
| Q |
222 |
tatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
19587009 |
tatgttggtattaacccacaggtacaa |
19586983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 23519314 - 23519161
Alignment:
| Q |
94 |
tgtcattccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattac |
193 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||| |||||||||| || | | ||| |||||||| |||| ||||||||| ||| |||||| || |
|
|
| T |
23519314 |
tgtctttccttataacccatgacccttctcacaactaccaatatgtgcggaaagtaaatagggctaattgtttgattattctaccttatttggacataac |
23519215 |
T |
 |
| Q |
194 |
taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
23519214 |
taatccggagatggtggaaaatttgctttatgttggaactaacccacgggtaca |
23519161 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 17818194 - 17818320
Alignment:
| Q |
121 |
ctcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgct |
220 |
Q |
| |
|
||||||||||||||||||| | ||| | | || ||||||| ||||| |||||||||||||| || |||||||||||| ||||||| ||||| ||| | |
|
|
| T |
17818194 |
ctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgtaggtggtagaaaacttggt |
17818293 |
T |
 |
| Q |
221 |
ttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
17818294 |
ttatgttggcactaacccacaggtaca |
17818320 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 18852748 - 18852822
Alignment:
| Q |
171 |
attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
18852748 |
attctacctaattcagatattactaatccggagatggtagaaaatt---tttatgttggcactaacccacaggtacaa |
18852822 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 29685293 - 29685338
Alignment:
| Q |
203 |
ggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29685293 |
ggtggtggaaaatttgctttatgttagtactaacccacaggtacaa |
29685338 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 24390326 - 24390285
Alignment:
| Q |
206 |
ggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
24390326 |
ggtggaaaatttgctttatgctggtactaacaaacaggtaca |
24390285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 20000877 - 20001103
Alignment:
| Q |
28 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20000877 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactttgtcattccttaaaacccatgaccctac |
20000976 |
T |
 |
| Q |
122 |
tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt |
221 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20000977 |
tcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatctggaggtggtggaaaatttgctt |
20001076 |
T |
 |
| Q |
222 |
tatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20001077 |
tatgttggtactaacccacaggtacaa |
20001103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 20040615 - 20040479
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | ||| | | || |||||| ||||| |||||||||||||| || ||||||||||| |||||||| | |
|
|
| T |
20040615 |
catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaatccagaggtggtag |
20040516 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| | | |||||||||| ||||||||||||||||| |
|
|
| T |
20040515 |
aaaactaggtttatgttggcactaacccacaggtaca |
20040479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 21855323 - 21855186
Alignment:
| Q |
107 |
aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg |
206 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| | ||| | | || ||||||| ||||| |||||||||||||| || |||||||||||| ||||| |
|
|
| T |
21855323 |
aacccataacccttctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtg |
21855224 |
T |
 |
| Q |
207 |
gtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|| ||||| | |||||||||| ||||||| ||||||||| |
|
|
| T |
21855223 |
gtagaaaact---tttatgttggcactaacctacaggtaca |
21855186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 17619412 - 17619545
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
|||| |||| ||||||||| ||||||||| | ||| | | || ||||||| ||||| |||||||||||||| || |||||||||||| ||||||| | |
|
|
| T |
17619412 |
catggcccttctcacaatttccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtag |
17619511 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| | |||||||||| ||||||||||||||||| |
|
|
| T |
17619512 |
aaaact---tttatgttggcactaacccacaggtaca |
17619545 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 52209 - 51962
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||| || |
|
|
| T |
52209 |
cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactttgtcctt |
52110 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
52109 |
ccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattactattccg |
52010 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52009 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
51962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 29319 - 29566
Alignment:
| Q |
7 |
cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt |
100 |
Q |
| |
|
|||||||| | |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29319 |
cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactttgtcatt |
29418 |
T |
 |
| Q |
101 |
ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
29419 |
ccttaaaacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtatgattattctacctaattcggacattactaatccg |
29518 |
T |
 |
| Q |
201 |
gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29519 |
gaggtggtagaaaatttgctttatgttggtactaacccacaggtacaa |
29566 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 23712352 - 23712116
Alignment:
| Q |
18 |
aagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaaccc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||| ||||||| ||||| |
|
|
| T |
23712352 |
aagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtctttccttagaaccc |
23712253 |
T |
 |
| Q |
112 |
atgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgga |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23712252 |
atgaccatactcacaattaccaatatgaatggaggattattagaactaattttttgattattctacctaattcggacattactaatccggaggtggtgga |
23712153 |
T |
 |
| Q |
212 |
aaatttgctttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23712152 |
aaatttgctttatgttggtcctaacccacaggtacaa |
23712116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 20446386 - 20446255
Alignment:
| Q |
116 |
ccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaat |
215 |
Q |
| |
|
|||| ||||||||||||||||||| | ||| | | || ||||||| ||||| |||||||||||||| || |||||||||||| ||||||| ||||| |
|
|
| T |
20446386 |
cccttctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaac |
20446287 |
T |
 |
| Q |
216 |
ttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |
|
|
| T |
20446286 |
ttggtttatgttggcactaacccacaggtaca |
20446255 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 21282458 - 21282320
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaa-ttgcttgacaattctacctaattcggacattactaatccggaggtggt |
208 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| | ||| | | || ||||| |||||||| |||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
21282458 |
ccataacccttctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccggaggtggt |
21282359 |
T |
 |
| Q |
209 |
ggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
21282358 |
agaaaacttggtttatgttggcactaacccacaggtaca |
21282320 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 18487564 - 18487473
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||| |||||| |||||||| ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
18487564 |
gctaatttcttgattattctacctaattcagatattattaatcctgaggtggtagaaaacttggtttatgttggcactaacccacaggtaca |
18487473 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 23602138 - 23602050
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||||||||||| ||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
23602138 |
gctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca |
23602050 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 24939246 - 24939334
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||||||| || ||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
24939246 |
gctaatttcttgattattctacctaattcagatattactaattcgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca |
24939334 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 24218545 - 24218633
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||||||||||||| |||| ||||| | ||||||||| ||||||||||| ||||| |
|
|
| T |
24218545 |
gctaatttcttgattattctacctaattcagatattactaatccggagatggtagaaaact---attatgttggcactaacccacatgtaca |
24218633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 11540 - 11313
Alignment:
| Q |
28 |
gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttata------ctactttgtcattccttaaaacccatgaccctac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||| |||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
11540 |
gggtgagtgtgaatcaagggatcaagaggatagaggggaactattatctagacttatataatctcactactttgtccttccttagaacccatgaccatac |
11441 |
T |
 |
| Q |
122 |
tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg-aaaatttgct |
220 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
11440 |
tcacaattaccaatatgagtggagaattattagagctaattgtttgattattctacctaatccggacataactaatctggaggtggtggaaaaatttgct |
11341 |
T |
 |
| Q |
221 |
ttatgttggtactaacccacaggtacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11340 |
ttatgttggtactaacccacaggtacaa |
11313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 24500997 - 24501134
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
||||| |||| ||||||||||||||||| | | ||| | | || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24500997 |
ccatggcccttctcacaattaccaatattagtggagagtcaataatgctaattgcttgattattctacctaattcggacattactaatccggaggtggta |
24501096 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
24501097 |
gaaaacttgatttatgttggcactaacccacaggtaca |
24501134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 25339661 - 25339516
Alignment:
| Q |
102 |
cttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccgg |
201 |
Q |
| |
|
|||| ||| |||| ||| |||||||||||||||||||| | || | | ||| |||||||| |||| |||||||||||| ||||||| ||||||| || |
|
|
| T |
25339661 |
cttagaactcatggcccaactcacaattaccaatatgagtggaaggtcaatagggctaattgtttgattattctacctaatccggacataactaatctgg |
25339562 |
T |
 |
| Q |
202 |
aggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
25339561 |
aggtggtggaaaattttctttatgttggcactaactcacatgtaca |
25339516 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0222 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0222
Description:
Target: scaffold0222; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 18541 - 18632
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
18541 |
gctaatttcttgattattctacctaattcagatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca |
18632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 11860 - 11741
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||| | | || ||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
11860 |
ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatctggaggtggta |
11761 |
T |
 |
| Q |
210 |
gaaaatttgctttatgttgg |
229 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
11760 |
gaaaacttggtttatgttgg |
11741 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 1275 - 1411
Alignment:
| Q |
111 |
catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg |
210 |
Q |
| |
|
||||||||| || |||||||||||||||| | ||| | | | ||||||| ||||| |||||||||||||| || |||||||||| ||||||||| | |
|
|
| T |
1275 |
catgacccttctaacaattaccaatatgagtggagagtcaattatgctaatttcttgattattctacctaattcagatattactaatctggaggtggtag |
1374 |
T |
 |
| Q |
211 |
aaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
1375 |
aaaacttggtttatgttggcactaacccacaggtaca |
1411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 17034 - 17138
Alignment:
| Q |
110 |
ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||| | | || ||||||||||||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
17034 |
ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatacagaggtggta |
17133 |
T |
 |
| Q |
210 |
gaaaa |
214 |
Q |
| |
|
||||| |
|
|
| T |
17134 |
gaaaa |
17138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1184 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1184
Description:
Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 571 - 537
Alignment:
| Q |
206 |
ggtggaaaatttgctttatgttggtactaacccac |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
571 |
ggtggaaaatttgctttatgttggtactaacccac |
537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 38131 - 38043
Alignment:
| Q |
156 |
gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||||||| | ||||||| ||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
38131 |
gctaatttcttgattattctacctaattcagatattactaattctaaggtggtagaaaactt---ttatgttggcactaacccacaggtaca |
38043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 12927 - 12854
Alignment:
| Q |
171 |
attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca |
247 |
Q |
| |
|
||||||||||| | || |||||||||| ||||||||| ||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
12927 |
attctacctaaattagatattactaatctggaggtggtagaaaactt---ttatgttggcactaacccacaggtaca |
12854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University