View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17440_low_8 (Length: 268)

Name: NF17440_low_8
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17440_low_8
NF17440_low_8
[»] chr4 (8 HSPs)
chr4 (7-248)||(15349253-15349494)
chr4 (7-248)||(14687181-14687428)
chr4 (7-248)||(42711184-42711431)
chr4 (158-247)||(11498023-11498112)
chr4 (111-247)||(45240267-45240404)
chr4 (171-247)||(18290748-18290824)
chr4 (110-247)||(10629417-10629551)
chr4 (171-230)||(11918125-11918184)
[»] chr7 (13 HSPs)
chr7 (7-248)||(540168-540409)
chr7 (7-248)||(16327176-16327423)
chr7 (7-248)||(9581460-9581707)
chr7 (7-248)||(9729312-9729559)
chr7 (32-248)||(4311310-4311532)
chr7 (28-248)||(8783498-8783724)
chr7 (7-163)||(14223144-14223306)
chr7 (110-247)||(23513736-23513873)
chr7 (114-247)||(5395811-5395944)
chr7 (120-247)||(4462117-4462244)
chr7 (110-247)||(13741088-13741225)
chr7 (110-247)||(12565670-12565807)
chr7 (107-247)||(10439748-10439888)
[»] chr1 (3 HSPs)
chr1 (7-248)||(27045431-27045672)
chr1 (116-214)||(22626469-22626567)
chr1 (172-247)||(21785853-21785925)
[»] chr3 (10 HSPs)
chr3 (29-248)||(6813448-6813667)
chr3 (6-248)||(12777913-12778161)
chr3 (28-248)||(15024282-15024508)
chr3 (111-247)||(20562017-20562153)
chr3 (111-247)||(20564325-20564461)
chr3 (156-247)||(13090217-13090305)
chr3 (111-247)||(20559709-20559845)
chr3 (156-247)||(9362367-9362455)
chr3 (157-247)||(13096427-13096514)
chr3 (202-248)||(3246922-3246968)
[»] chr6 (8 HSPs)
chr6 (7-248)||(22062920-22063161)
chr6 (110-247)||(18188979-18189116)
chr6 (28-248)||(19586983-19587194)
chr6 (94-247)||(23519161-23519314)
chr6 (121-247)||(17818194-17818320)
chr6 (171-248)||(18852748-18852822)
chr6 (203-248)||(29685293-29685338)
chr6 (206-247)||(24390285-24390326)
[»] chr8 (4 HSPs)
chr8 (28-248)||(20000877-20001103)
chr8 (111-247)||(20040479-20040615)
chr8 (107-247)||(21855186-21855323)
chr8 (111-247)||(17619412-17619545)
[»] scaffold0035 (1 HSPs)
scaffold0035 (7-248)||(51962-52209)
[»] scaffold0090 (1 HSPs)
scaffold0090 (7-248)||(29319-29566)
[»] chr5 (7 HSPs)
chr5 (18-248)||(23712116-23712352)
chr5 (116-247)||(20446255-20446386)
chr5 (110-247)||(21282320-21282458)
chr5 (156-247)||(18487473-18487564)
chr5 (156-247)||(23602050-23602138)
chr5 (156-247)||(24939246-24939334)
chr5 (156-247)||(24218545-24218633)
[»] scaffold0485 (1 HSPs)
scaffold0485 (28-248)||(11313-11540)
[»] chr2 (2 HSPs)
chr2 (110-247)||(24500997-24501134)
chr2 (102-247)||(25339516-25339661)
[»] scaffold0222 (1 HSPs)
scaffold0222 (156-247)||(18541-18632)
[»] scaffold0220 (1 HSPs)
scaffold0220 (110-229)||(11741-11860)
[»] scaffold0566 (1 HSPs)
scaffold0566 (111-247)||(1275-1411)
[»] scaffold0026 (1 HSPs)
scaffold0026 (110-214)||(17034-17138)
[»] scaffold1184 (1 HSPs)
scaffold1184 (206-240)||(537-571)
[»] scaffold0113 (1 HSPs)
scaffold0113 (156-247)||(38043-38131)
[»] scaffold0012 (1 HSPs)
scaffold0012 (171-247)||(12854-12927)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 15349494 - 15349253
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 106  Q
    |||||||| | |||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15349494 cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 15349395  T
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
15349394 aacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg 15349295  T
207 gtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
15349294 gtggaaaatttgctttatgttggtactaacccacaggtacaa 15349253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 14687428 - 14687181
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||      |||||||||||    
14687428 cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagaggagaactattatctaaacttatatactctcactactttgtcatt 14687329  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||  || |||||||||||||||||||||||||||    
14687328 ccttagaacccatgaccctactcacaattaccaatataaatggagaattattagagctaattgtttgattatgctacctaattcggacattactaatccg 14687229  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
14687228 gaggcggtggaaaatttgctttatgttggtactaacccacaggtacaa 14687181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 42711431 - 42711184
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||      |||||||| ||    
42711431 cttttattgctaagaggtttagggtgagtgtgaatcaaaggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt 42711332  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||| ||||||||| ||||||| ||||  ||||||||||||||||||||||||||||||    
42711331 ccttagaacccatgaccatactcataattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccg 42711232  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
42711231 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 42711184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 11498112 - 11498023
Alignment:
158 taattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||||||||  ||||||||||||||  | |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
11498112 taattgcttgattattctacctaattcaaatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca 11498023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 45240404 - 45240267
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaa-ttgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    |||| |||| ||||||||||||||||||| | |||  | | ||  ||||| ||||||||  |||||||| |||||| | ||||||||||||||||||||     
45240404 catggcccttctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccggaggtggta 45240305  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| ||| |||||||||| |||||||||||||||||    
45240304 gaaaacttggtttatgttggcactaacccacaggtaca 45240267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 18290748 - 18290824
Alignment:
171 attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||||||||||| || |||||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||||    
18290748 attctacctaattcagatattactaatccggaggtgatagaaaacttggtttatgttggcactaacccacaggtaca 18290824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 10629417 - 10629551
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    ||||| |||| ||||||||| ||||||||| | |||  | | ||  ||||||| |||||  |||||||||||||| || |||||||||||| ||| |||     
10629417 ccatggcccttctcacaattcccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggcggta 10629516  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| |   |||||||||| |||||||||||||||||    
10629517 gaaaact---tttatgttggcactaacccacaggtaca 10629551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 11918184 - 11918125
Alignment:
171 attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggt 230  Q
    |||||||||||| ||||||| ||||| ||| ||||||||||||| ||| |||||||||||    
11918184 attctacctaatccggacataactaacccgaaggtggtggaaaaattgttttatgttggt 11918125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 540409 - 540168
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 106  Q
    |||||||| | |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
540409 cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 540310  T
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    ||||||||||||||||||||||||||||||||||  ||| || |||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
540309 aacccatgaccctactcacaattaccaatatgaaaggagaatcattaaagctaattgtttgattattctacctaattcggacattactaatccggaggtg 540210  T
207 gtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
540209 gtggaaaatttgctttatgttggtactaacccacaggtacaa 540168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 16327423 - 16327176
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||      |||||||| ||    
16327423 cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactttgtcctt 16327324  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
16327323 ccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattactaatccg 16327224  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
16327223 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 16327176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 9581460 - 9581707
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||      |||||||| ||    
9581460 cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt 9581559  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||| ||||||| ||||  |||||||||||||||||||||||||||| |    
9581560 ccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcggacattactaatctg 9581659  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
9581660 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 9581707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 9729312 - 9729559
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||      |||||||| ||    
9729312 cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtcttt 9729411  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||| ||||||| ||||  |||||||||||||| |||||||||||||||    
9729412 ccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcagacattactaatccg 9729511  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
9729512 gaggtggtggaaaatttgctttatgttggtactaatccacaggtacaa 9729559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 4311310 - 4311532
Alignment:
32 gagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctactcac 125  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||||      |||||||| || |||| |||||||| ||||||||||    
4311310 gagtgtgaatcaagagatcaagaggatagaggggaactattatctagacttatatactctcactactttgtcctttcttagaacccatggccctactcac 4311409  T
126 aattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatg 225  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
4311410 aattaccaatatgaatggagaattattagagctaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttacg 4311509  T
226 ttggtactaacccacaggtacaa 248  Q
    |||||||||||||||| ||||||    
4311510 ttggtactaacccacatgtacaa 4311532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 8783724 - 8783498
Alignment:
28 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac 121  Q
    ||||||||||||||||| |||||||| ||||||| | ||||||||||||| |||| ||||||      |||||| | ||||||| |||||||| ||||||    
8783724 gggtgagtgtgaatcaatggatcaaggggatagaggggaactattatctagacttatatactctcactactttgcccttccttacaacccatggccctac 8783625  T
122 tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt 221  Q
    |||||||||| ||||||||  ||| ||||||| || |||||  ||||  ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
8783624 tcacaattacaaatatgaaaggagaattattacagataattttttgattattctccctaattcggacataactaatccggaggtggtggaaaatttgctt 8783525  T
222 tatgttggtactaacccacaggtacaa 248  Q
    |||||||||||||||||||| ||||||    
8783524 tatgttggtactaacccacatgtacaa 8783498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 14223306 - 14223144
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||| |||  |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||      |||||||||||    
14223306 cttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggaaagaggagaactattatctaaacttatatactctcactactttgtcatt 14223207  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattg 163  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
14223206 ccttaaagcccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattg 14223144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 23513736 - 23513873
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    ||||| |||| |||||||||||| |||||| | |||  | | ||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||     
23513736 ccatggcccttctcacaattacctatatgagtggagagtcaataatgctaattacttgattattctacctaattcggacattactaatccggaggtggta 23513835  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| ||  |||||||||| |||||||||||||||||    
23513836 gaaaactttgtttatgttggcactaacccacaggtaca 23513873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 5395811 - 5395944
Alignment:
114 gaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaa 213  Q
    |||||| || ||||||||||| |||| | |||| | | ||  ||||||| |||||  |||||||||||||| || |||||||||||||||||||| ||||    
5395811 gacccttctaacaattaccaaaatgagtggagcgtcaataatgctaatttcttgattattctacctaattcagatattactaatccggaggtggtagaaa 5395910  T
214 atttgctttatgttggtactaacccacaggtaca 247  Q
    | ||| |||||||||| |||||||||||||||||    
5395911 acttggtttatgttggcactaacccacaggtaca 5395944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 4462244 - 4462117
Alignment:
120 actcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgc 219  Q
    ||||||||| |||||||||| | ||  || ||||||||| |||| ||||  |||||||||||| ||  ||| ||||| ||| ||||||||||||||||||    
4462244 actcacaatgaccaatatgattagaaaatcattagagctcattgtttgattattctacctaatccgttcataactaacccgaaggtggtggaaaatttgc 4462145  T
220 tttatgttggtactaacccacaggtaca 247  Q
    ||||| ||||||||||||||| ||||||    
4462144 tttatattggtactaacccactggtaca 4462117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 13741088 - 13741225
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    ||||| |||| ||||||||||||||||||| | |||  | | ||  | |||||||||||  ||||||||||||||||||||||||||| ||||||||||     
13741088 ccatggcccttctcacaattaccaatatgagtggagagtcaataatgataattgcttgattattctacctaattcggacattactaattcggaggtggta 13741187  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| |   |||||||||| ||||| |||||||||||    
13741188 gaaaactatgtttatgttggcactaatccacaggtaca 13741225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 12565670 - 12565807
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    ||||| |||| || |||||||||||||||| | |||  | | ||  ||||||| |||||  |||  ||||||||| || ||||||||| ||||||||||     
12565670 ccatggcccttctaacaattaccaatatgagtggagagtcaataatgctaatttcttgattatttaacctaattcagatattactaattcggaggtggta 12565769  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| ||| ||||||||||||||||||||| ||||||    
12565770 gaaaacttggtttatgttggtactaacccaccggtaca 12565807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 10439888 - 10439748
Alignment:
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    |||||||  |||| ||||||||||||||||||| | |||  | | ||  | ||||| |||||  |||||||||||||| || |||||||| | | |||||    
10439888 aacccatagcccttctcacaattaccaatatgagtggagagtcaataatgataatttcttgattattctacctaattcagatattactaagctgaaggtg 10439789  T
207 gtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    || ||||| ||| |||||||||| |||||||||||||||||    
10439788 gtagaaaacttggtttatgttggcactaacccacaggtaca 10439748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 27045431 - 27045672
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 106  Q
    |||||||| | |||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27045431 cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 27045530  T
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    |||||||||||||||||||||||||||||||| || ||| || |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
27045531 aacccatgaccctactcacaattaccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg 27045630  T
207 gtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
27045631 gtggaaaatttgctttatgttggtactaacccacaggtacaa 27045672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 22626567 - 22626469
Alignment:
116 ccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaa 214  Q
    |||| ||||||||||||||||||| | |||  | | ||  |||||||||||||  ||||||||||||||||| ||||||||||||| |||||| |||||    
22626567 cccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatccggtggtggtagaaaa 22626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 21785925 - 21785853
Alignment:
172 ttctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||||||||| || |||||||||||| ||||||| ||||| |   |||||||||| |||||||||||||||||    
21785925 ttctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 21785853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 6813448 - 6813667
Alignment:
29 ggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaaaacccatgaccctactcacaat 128  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
6813448 ggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaaaaaccatgactctactcacaat 6813547  T
129 taccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttg 228  Q
    |||||||||| || ||| || |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6813548 taccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttg 6813647  T
229 gtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||    
6813648 gtactaacccacaggtacaa 6813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 12778161 - 12777913
Alignment:
6 ccttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcat 99  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || || ||||||| |||||| | ||||      |||||||| |    
12778161 ccttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaattattatccaaacttatttactctcactactttgtcct 12778062  T
100 tccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatcc 199  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||  ||||||||||||||||||||||||||| |    
12778061 tccttagaacccatgaccctactcacaattatcaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaattc 12777962  T
200 ggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
12777961 ggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 12777913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 15024282 - 15024508
Alignment:
28 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac 121  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||| |||| ||||||      |||||||| ||||||| |||||||||||||||    
15024282 gggtgagtgtgaatcaagggatcaagaggatagaggggtactattatctatacttatatactctcactactttgtccttccttagaacccatgaccctac 15024381  T
122 tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt 221  Q
    |||||||||||||||||||| ||| |||| |||||||||||| || |  |||||||||||| | ||||| |||||||||||||||||||||||||||| |    
15024382 tcacaattaccaatatgaatggagaattaatagagctaattgttttattattctacctaatccagacataactaatccggaggtggtggaaaatttgcat 15024481  T
222 tatgttggtactaacccacaggtacaa 248  Q
    |||||||||||||| ||||| ||||||    
15024482 tatgttggtactaatccacatgtacaa 15024508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20562017 - 20562153
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    |||| |||| ||||||||||||||||||| | |||  | | ||   |||||| |||||  |||||||||||||| || ||||||||| |||||||||| |    
20562017 catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag 20562116  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| | | ||| |||||| |||||||||||||||||    
20562117 aaaactaggtttgtgttggcactaacccacaggtaca 20562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20564325 - 20564461
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    |||| |||| ||||||||||||||||||| | |||  | | ||   |||||| |||||  |||||||||||||| || ||||||||| |||||||||| |    
20564325 catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag 20564424  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| | | ||| |||||| |||||||||||||||||    
20564425 aaaactaggtttgtgttggcactaacccacaggtaca 20564461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 13090305 - 13090217
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || |||||||||||| ||||||| ||||| |   |||||||||| |||||||||||||||||    
13090305 gctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 13090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 20559709 - 20559845
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    |||| |||| ||||||||||||||||||| | |||  | | ||   |||||| |||||  |||||||||||||| || ||||||||| |||||||||| |    
20559709 catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtag 20559808  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| | | ||| |||||| |||||||||||| ||||    
20559809 aaaactaggtttgtgttggcactaacccacagataca 20559845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 9362455 - 9362367
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  ||||||||||||||  | |||||||||||| ||||||| ||||| |   |||||||||| |||||||||||||||||    
9362455 gctaatttcttgattattctacctaattcaaatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 9362367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 13096427 - 13096514
Alignment:
157 ctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||| |||||  |||||||||||||| || |||||||||||| ||||||| ||||| |   |||||||||  |||||||||||||||||    
13096427 ctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttgacactaacccacaggtaca 13096514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 3246968 - 3246922
Alignment:
202 aggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||    
3246968 aggtggtggaaaatttgttttatttttgtactaacccacaggtacaa 3246922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 22063161 - 22062920
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 106  Q
    |||||||| | |||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22063161 cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactactttgtcattccttaa 22063062  T
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    || ||||||| ||||||||||||||||| ||| || ||| || |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
22063061 aaaccatgactctactcacaattaccaacatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatccggaggtg 22062962  T
207 gtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
22062961 gtggaaaatttgctttatgttggtactaacccacaggtacaa 22062920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 18189116 - 18188979
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    |||||||||| ||||||||||||||||||| | |||  | | ||  |||||||||||||  ||||||||||||||||| | ||||||||||||||||||     
18189116 ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggataatactaatccggaggtggta 18189017  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| ||| |||||||||| |||||||||||||||||    
18189016 gaaaacttggtttatgttggcactaacccacaggtaca 18188979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 19587194 - 19586983
Alignment:
28 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac 121  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||| |||| ||||||      |||||||| ||||||| ||||||||  |||||    
19587194 gggtgagtctgaatcaagggatcaagaggatagagaggaactattatctacacttatatactctcactactttgtccttccttagaacccatggacctac 19587095  T
122 tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt 221  Q
    | |||||||||||||| ||  ||| ||||||||||||||||| ||||  ||||||||               ||||| ||||||||||||||||||| ||    
19587094 ttacaattaccaatataaacggagaattattagagctaattgtttgattattctacc---------------taatctggaggtggtggaaaatttgatt 19587010  T
222 tatgttggtactaacccacaggtacaa 248  Q
    |||||||||| ||||||||||||||||    
19587009 tatgttggtattaacccacaggtacaa 19586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 23519314 - 23519161
Alignment:
94 tgtcattccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattac 193  Q
    |||| ||||||| ||||||||||||| ||||||| ||||||||||    ||   | | ||| |||||||| ||||  ||||||||| ||| |||||| ||    
23519314 tgtctttccttataacccatgacccttctcacaactaccaatatgtgcggaaagtaaatagggctaattgtttgattattctaccttatttggacataac 23519215  T
194 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
23519214 taatccggagatggtggaaaatttgctttatgttggaactaacccacgggtaca 23519161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 17818194 - 17818320
Alignment:
121 ctcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgct 220  Q
    ||||||||||||||||||| | |||  | | ||  ||||||| |||||  |||||||||||||| || |||||||||||| ||||||| ||||| ||| |    
17818194 ctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgtaggtggtagaaaacttggt 17818293  T
221 ttatgttggtactaacccacaggtaca 247  Q
    ||||||||| |||||||||||||||||    
17818294 ttatgttggcactaacccacaggtaca 17818320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 18852748 - 18852822
Alignment:
171 attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    |||||||||||||| || ||||||||||||||| |||| |||||||   |||||||||| ||||||||||||||||||    
18852748 attctacctaattcagatattactaatccggagatggtagaaaatt---tttatgttggcactaacccacaggtacaa 18852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 29685293 - 29685338
Alignment:
203 ggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
29685293 ggtggtggaaaatttgctttatgttagtactaacccacaggtacaa 29685338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 24390326 - 24390285
Alignment:
206 ggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
24390326 ggtggaaaatttgctttatgctggtactaacaaacaggtaca 24390285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 20000877 - 20001103
Alignment:
28 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaacccatgaccctac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
20000877 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactttgtcattccttaaaacccatgaccctac 20000976  T
122 tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctt 221  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
20000977 tcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattactaatctggaggtggtggaaaatttgctt 20001076  T
222 tatgttggtactaacccacaggtacaa 248  Q
    |||||||||||||||||||||||||||    
20001077 tatgttggtactaacccacaggtacaa 20001103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 20040615 - 20040479
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    |||| |||| ||||||||||||||||||| | |||  | | ||   |||||| |||||  |||||||||||||| || ||||||||||| |||||||| |    
20040615 catggcccttctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaatccagaggtggtag 20040516  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| | | |||||||||| |||||||||||||||||    
20040515 aaaactaggtttatgttggcactaacccacaggtaca 20040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 21855323 - 21855186
Alignment:
107 aacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtg 206  Q
    ||||||| ||||| ||||||||||||||||||| | |||  | | ||  ||||||| |||||  |||||||||||||| || |||||||||||| |||||    
21855323 aacccataacccttctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtg 21855224  T
207 gtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    || ||||| |   |||||||||| ||||||| |||||||||    
21855223 gtagaaaact---tttatgttggcactaacctacaggtaca 21855186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 17619412 - 17619545
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    |||| |||| ||||||||| ||||||||| | |||  | | ||  ||||||| |||||  |||||||||||||| || |||||||||||| ||||||| |    
17619412 catggcccttctcacaatttccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtag 17619511  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| |   |||||||||| |||||||||||||||||    
17619512 aaaact---tttatgttggcactaacccacaggtaca 17619545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 52209 - 51962
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||      |||||||| ||    
52209 cttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactttgtcctt 52110  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
52109 ccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattactattccg 52010  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
52009 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 51962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 29319 - 29566
Alignment:
7 cttttatttcgaagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcatt 100  Q
    |||||||| | |||| |||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
29319 cttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactttgtcatt 29418  T
101 ccttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||  |||  ||||||||||||||||||||||||||||||    
29419 ccttaaaacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtatgattattctacctaattcggacattactaatccg 29518  T
201 gaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 248  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
29519 gaggtggtagaaaatttgctttatgttggtactaacccacaggtacaa 29566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 23712352 - 23712116
Alignment:
18 aagaggttcagggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actttgtcattccttaaaaccc 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||      |||||||| ||||||| |||||    
23712352 aagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtctttccttagaaccc 23712253  T
112 atgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgga 211  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||| ||||||  ||||  |||||||||||||||||||||||||||||||||||||||||    
23712252 atgaccatactcacaattaccaatatgaatggaggattattagaactaattttttgattattctacctaattcggacattactaatccggaggtggtgga 23712153  T
212 aaatttgctttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||| |||||||||||||||||    
23712152 aaatttgctttatgttggtcctaacccacaggtacaa 23712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 20446386 - 20446255
Alignment:
116 ccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaat 215  Q
    |||| ||||||||||||||||||| | |||  | | ||  ||||||| |||||  |||||||||||||| || |||||||||||| ||||||| |||||     
20446386 cccttctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaac 20446287  T
216 ttgctttatgttggtactaacccacaggtaca 247  Q
    ||| |||||||||| |||||||||||||||||    
20446286 ttggtttatgttggcactaacccacaggtaca 20446255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 21282458 - 21282320
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaa-ttgcttgacaattctacctaattcggacattactaatccggaggtggt 208  Q
    |||| ||||| ||||||||||||||||||| | |||  | | ||  ||||| ||||||||  |||||||| |||||| | ||||||||||||||||||||    
21282458 ccataacccttctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccggaggtggt 21282359  T
209 ggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
     ||||| ||| |||||||||| |||||||||||||||||    
21282358 agaaaacttggtttatgttggcactaacccacaggtaca 21282320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 18487564 - 18487473
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || |||| |||||| |||||||| ||||| ||| |||||||||| |||||||||||||||||    
18487564 gctaatttcttgattattctacctaattcagatattattaatcctgaggtggtagaaaacttggtttatgttggcactaacccacaggtaca 18487473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 23602138 - 23602050
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || |||||||||||| ||||||| ||||| |   |||||||||| |||||||||||||||||    
23602138 gctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 23602050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 24939246 - 24939334
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || ||||||||| || ||||||| ||||| |   |||||||||| |||||||||||||||||    
24939246 gctaatttcttgattattctacctaattcagatattactaattcgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 24939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 24218545 - 24218633
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || ||||||||||||||| |||| ||||| |    ||||||||| ||||||||||| |||||    
24218545 gctaatttcttgattattctacctaattcagatattactaatccggagatggtagaaaact---attatgttggcactaacccacatgtaca 24218633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 11540 - 11313
Alignment:
28 gggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttata------ctactttgtcattccttaaaacccatgaccctac 121  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| |||| ||||      |||||||||| ||||||| ||||||||||| |||    
11540 gggtgagtgtgaatcaagggatcaagaggatagaggggaactattatctagacttatataatctcactactttgtccttccttagaacccatgaccatac 11441  T
122 tcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg-aaaatttgct 220  Q
    |||||||||||||||||| | ||| ||||||||||||||||| ||||  |||||||||||| ||||||| ||||||| ||||||||||| ||||||||||    
11440 tcacaattaccaatatgagtggagaattattagagctaattgtttgattattctacctaatccggacataactaatctggaggtggtggaaaaatttgct 11341  T
221 ttatgttggtactaacccacaggtacaa 248  Q
    ||||||||||||||||||||||||||||    
11340 ttatgttggtactaacccacaggtacaa 11313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 24500997 - 24501134
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    ||||| |||| ||||||||||||||||| | | |||  | | ||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||     
24500997 ccatggcccttctcacaattaccaatattagtggagagtcaataatgctaattgcttgattattctacctaattcggacattactaatccggaggtggta 24501096  T
210 gaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||| ||| |||||||||| |||||||||||||||||    
24501097 gaaaacttgatttatgttggcactaacccacaggtaca 24501134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 25339661 - 25339516
Alignment:
102 cttaaaacccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccgg 201  Q
    |||| ||| |||| ||| |||||||||||||||||||| | ||   | | ||| |||||||| ||||  |||||||||||| ||||||| ||||||| ||    
25339661 cttagaactcatggcccaactcacaattaccaatatgagtggaaggtcaatagggctaattgtttgattattctacctaatccggacataactaatctgg 25339562  T
202 aggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||    
25339561 aggtggtggaaaattttctttatgttggcactaactcacatgtaca 25339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 18541 - 18632
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
18541 gctaatttcttgattattctacctaattcagatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca 18632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 11860 - 11741
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    |||||||||| ||||||||||||||||||| | |||  | | ||  |||||||||||||  ||||||||||||||||| |||||||||| |||||||||     
11860 ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatctggaggtggta 11761  T
210 gaaaatttgctttatgttgg 229  Q
    ||||| ||| ||||||||||    
11760 gaaaacttggtttatgttgg 11741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 1275 - 1411
Alignment:
111 catgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtgg 210  Q
    ||||||||| || |||||||||||||||| | |||  | | |   ||||||| |||||  |||||||||||||| || |||||||||| ||||||||| |    
1275 catgacccttctaacaattaccaatatgagtggagagtcaattatgctaatttcttgattattctacctaattcagatattactaatctggaggtggtag 1374  T
211 aaaatttgctttatgttggtactaacccacaggtaca 247  Q
    |||| ||| |||||||||| |||||||||||||||||    
1375 aaaacttggtttatgttggcactaacccacaggtaca 1411  T

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Target: scaffold0026 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 17034 - 17138
Alignment:
110 ccatgaccctactcacaattaccaatatgaatcgagcattattagagctaattgcttgacaattctacctaattcggacattactaatccggaggtggtg 209  Q
    |||||||||| ||||||||||||||||||| | |||  | | ||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||||||     
17034 ccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatacagaggtggta 17133  T
210 gaaaa 214  Q
    |||||    
17134 gaaaa 17138  T

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Target: scaffold1184 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 571 - 537
Alignment:
206 ggtggaaaatttgctttatgttggtactaacccac 240  Q
    |||||||||||||||||||||||||||||||||||    
571 ggtggaaaatttgctttatgttggtactaacccac 537  T

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Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 38131 - 38043
Alignment:
156 gctaattgcttgacaattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||| |||||  |||||||||||||| || ||||||||| |  ||||||| ||||| ||   ||||||||| |||||||||||||||||    
38131 gctaatttcttgattattctacctaattcagatattactaattctaaggtggtagaaaactt---ttatgttggcactaacccacaggtaca 38043  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 12927 - 12854
Alignment:
171 attctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 247  Q
    ||||||||||| |  || |||||||||| ||||||||| ||||| ||   ||||||||| |||||||||||||||||    
12927 attctacctaaattagatattactaatctggaggtggtagaaaactt---ttatgttggcactaacccacaggtaca 12854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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