View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17440_low_9 (Length: 250)
Name: NF17440_low_9
Description: NF17440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17440_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9216806 - 9216571
Alignment:
| Q |
1 |
ctaaatggatattccaacactcctatttttatatgtcaaaaatcaagcaaatcgttaattaaacaaaatattttaataatataccaaatatgagttaaca |
100 |
Q |
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| T |
9216806 |
ctaaatggatattccaacactcctatttttatatgtcaaaaatcaagcaaatcgttaattaaacaaaatattttaataatataccaaatatgagttaaca |
9216707 |
T |
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| Q |
101 |
aaagaattgaataatttagcactataagtttatttttgtttagcattacaaaactcgaaattacatgctgcaagtatcttgacttatttgaaatatg-nn |
199 |
Q |
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| T |
9216706 |
aaagatttgaataattcagcactataagtttatttttgtttagcattacaaaactcgaaattacatgctgcaagtatcttgacttatttgaaatatgaaa |
9216607 |
T |
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| Q |
200 |
nnnnntatatataatttttagttttattttcctgat |
235 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
9216606 |
aaaaatatatataatttttagttttactttcctgat |
9216571 |
T |
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