View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_high_12 (Length: 461)
Name: NF17441_high_12
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 31548159 - 31548578
Alignment:
| Q |
17 |
cataggcaaagatgcaaacctaaaatgaaaa-catcgtatttcagaataaattccaatggttaatgtgtatgtatgcatattgatttaaaaacatacata |
115 |
Q |
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| T |
31548159 |
cataggcaaagatgcaaacctaaaatgaaaaacttcatatttcagaataaatccaaatggttaatgtgtatgtatccatattgattta----catgcata |
31548254 |
T |
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| Q |
116 |
tttgaattgcagcataactgacatgtgccttatatgtagcattgatagatcagaaccaaagaaatccaaggaaaaatgtgaaaaatgctatacaacactt |
215 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
31548255 |
tttgaatagcagcataactgagacgtgccttatatgtagcattgatagatcagaaccaaagaaatccaaggaaaaatgtgaaaaatgatatacaaagctt |
31548354 |
T |
|
| Q |
216 |
acaacagaagaacttttacttaccttataaccatcaagagcactttgtacaagctgtgaaacttctacaaaaacttctacttgtgatacgtcttgtataa |
315 |
Q |
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||| ||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
31548355 |
acagcagaagagctttgaattaccttataaccatcaagagcactttgcacaagctgtgaaacttctacaaacacttcttcttgtgatatgtcttgtataa |
31548454 |
T |
|
| Q |
316 |
aaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcacatgagttgccaatttaataagatcataactaaaacaatcatagga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31548455 |
aaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcacacgagttgccaatttaataagatcataactaaaacaatcatagaa |
31548554 |
T |
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| Q |
416 |
aaataagaaaaattatactttcaa |
439 |
Q |
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| T |
31548555 |
aaataagaaaaattatactttcaa |
31548578 |
T |
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Back To:
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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 34650793 - 34650673
Alignment:
| Q |
235 |
ttaccttataaccatcaagagcactttgtacaagctgtgaaacttctacaaaaacttctacttgtgatacgtcttgtataaaaactttatcaaatttaaa |
334 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||| ||||| || | || || ||||||| |||||||| | || |
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| T |
34650793 |
ttaccttataaccatcaagagcactttgcacaagttgtgaaatttccgtaaatacttcttcttgtaatgcatcaggtgcaaaaactctatcaaatgtgaa |
34650694 |
T |
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| Q |
335 |
agaatgcttctggcctaaaaa |
355 |
Q |
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|||||| || || |||||||| |
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| T |
34650693 |
agaatgtttttgacctaaaaa |
34650673 |
T |
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