View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_high_16 (Length: 423)

Name: NF17441_high_16
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_high_16
NF17441_high_16
[»] chr2 (16 HSPs)
chr2 (170-283)||(7175815-7175928)
chr2 (1-109)||(3925583-3925691)
chr2 (314-405)||(7175929-7176020)
chr2 (118-166)||(1292095-1292143)
chr2 (117-166)||(18297192-18297241)
chr2 (117-166)||(39355136-39355185)
chr2 (115-166)||(7487170-7487221)
chr2 (115-166)||(8149930-8149981)
chr2 (115-166)||(8154554-8154605)
chr2 (115-166)||(15016482-15016533)
chr2 (115-157)||(9143684-9143726)
chr2 (117-165)||(2264625-2264673)
chr2 (115-166)||(34464810-34464861)
chr2 (117-166)||(25193962-25194011)
chr2 (115-166)||(18762936-18762987)
chr2 (124-159)||(4578590-4578625)
[»] chr4 (24 HSPs)
chr4 (1-115)||(54751596-54751710)
chr4 (115-166)||(13635641-13635692)
chr4 (115-166)||(49425973-49426024)
chr4 (115-166)||(51921181-51921232)
chr4 (115-166)||(53441419-53441470)
chr4 (117-166)||(638965-639014)
chr4 (117-166)||(10473619-10473668)
chr4 (117-166)||(26577285-26577334)
chr4 (117-166)||(45256866-45256915)
chr4 (118-166)||(35291464-35291512)
chr4 (115-166)||(11786073-11786124)
chr4 (115-166)||(11798240-11798291)
chr4 (115-166)||(15051052-15051103)
chr4 (115-166)||(27865653-27865704)
chr4 (115-166)||(30597798-30597849)
chr4 (118-166)||(50644642-50644690)
chr4 (115-166)||(49492428-49492479)
chr4 (117-166)||(51836351-51836400)
chr4 (121-160)||(1621981-1622020)
chr4 (115-166)||(36011942-36011993)
chr4 (117-157)||(38245889-38245929)
chr4 (122-166)||(46672544-46672588)
chr4 (118-146)||(9551626-9551654)
chr4 (67-107)||(54760972-54761012)
[»] chr5 (13 HSPs)
chr5 (1-114)||(30411033-30411146)
chr5 (115-166)||(14394567-14394618)
chr5 (115-166)||(14940272-14940323)
chr5 (115-166)||(26637753-26637804)
chr5 (115-166)||(30783557-30783607)
chr5 (115-166)||(37456779-37456830)
chr5 (117-166)||(28069271-28069320)
chr5 (117-166)||(34330157-34330206)
chr5 (115-166)||(3883951-3884002)
chr5 (115-166)||(15416763-15416814)
chr5 (117-146)||(2826098-2826127)
chr5 (117-146)||(16667722-16667751)
chr5 (67-107)||(30404491-30404531)
[»] chr8 (17 HSPs)
chr8 (1-109)||(18022058-18022166)
chr8 (115-166)||(1149939-1149990)
chr8 (115-166)||(41099281-41099332)
chr8 (117-166)||(4835542-4835591)
chr8 (117-166)||(4840987-4841036)
chr8 (118-166)||(1209758-1209806)
chr8 (117-166)||(39657732-39657781)
chr8 (118-166)||(2751207-2751255)
chr8 (115-166)||(10237453-10237504)
chr8 (115-166)||(34633237-34633288)
chr8 (115-166)||(41451204-41451255)
chr8 (115-157)||(7857779-7857821)
chr8 (125-166)||(7059144-7059185)
chr8 (115-160)||(43690739-43690784)
chr8 (126-166)||(30414024-30414064)
chr8 (115-166)||(19784370-19784421)
chr8 (126-166)||(15227140-15227180)
[»] chr3 (21 HSPs)
chr3 (1-109)||(9180044-9180152)
chr3 (115-166)||(9595896-9595947)
chr3 (117-166)||(19384405-19384454)
chr3 (117-166)||(50755163-50755212)
chr3 (115-166)||(2941842-2941893)
chr3 (115-166)||(9106366-9106417)
chr3 (115-166)||(19284770-19284821)
chr3 (115-166)||(26662454-26662505)
chr3 (115-166)||(26960725-26960776)
chr3 (115-166)||(30947827-30947878)
chr3 (115-166)||(47335131-47335182)
chr3 (115-166)||(3475323-3475374)
chr3 (123-166)||(6097600-6097643)
chr3 (115-166)||(33413929-33413980)
chr3 (119-166)||(54379265-54379312)
chr3 (124-166)||(31853164-31853206)
chr3 (117-160)||(7044387-7044430)
chr3 (115-166)||(10986451-10986502)
chr3 (115-166)||(46237674-46237725)
chr3 (117-166)||(51361547-51361596)
chr3 (118-146)||(47729134-47729162)
[»] scaffold0074 (1 HSPs)
scaffold0074 (115-166)||(24373-24424)
[»] scaffold0045 (1 HSPs)
scaffold0045 (115-166)||(33783-33834)
[»] chr7 (14 HSPs)
chr7 (115-166)||(46358619-46358670)
chr7 (115-166)||(47340246-47340297)
chr7 (115-166)||(30884138-30884189)
chr7 (115-166)||(31660168-31660219)
chr7 (115-166)||(35737047-35737098)
chr7 (115-166)||(41911028-41911079)
chr7 (117-166)||(763798-763847)
chr7 (117-166)||(46572598-46572647)
chr7 (117-166)||(48692021-48692070)
chr7 (121-166)||(16933159-16933204)
chr7 (121-166)||(16938542-16938587)
chr7 (117-166)||(15973884-15973933)
chr7 (117-166)||(32685868-32685917)
chr7 (124-166)||(48306331-48306372)
[»] chr6 (13 HSPs)
chr6 (115-166)||(6900902-6900953)
chr6 (115-166)||(15493273-15493324)
chr6 (115-166)||(1449641-1449692)
chr6 (115-166)||(7089181-7089232)
chr6 (117-164)||(1536814-1536861)
chr6 (115-166)||(31216761-31216812)
chr6 (115-166)||(34869979-34870030)
chr6 (117-166)||(35121490-35121538)
chr6 (121-166)||(878365-878410)
chr6 (117-166)||(33345360-33345408)
chr6 (117-151)||(24736574-24736608)
chr6 (117-151)||(24736610-24736644)
chr6 (67-107)||(15007533-15007573)
[»] chr1 (22 HSPs)
chr1 (115-166)||(18618934-18618985)
chr1 (115-166)||(24636025-24636076)
chr1 (115-166)||(49936853-49936904)
chr1 (115-166)||(50351902-50351953)
chr1 (117-166)||(11422541-11422590)
chr1 (117-166)||(23174426-23174475)
chr1 (118-166)||(23817412-23817460)
chr1 (115-166)||(16976054-16976105)
chr1 (115-166)||(20434638-20434689)
chr1 (115-166)||(25888944-25888995)
chr1 (115-166)||(43452641-43452692)
chr1 (115-166)||(48762247-48762298)
chr1 (117-166)||(4097133-4097182)
chr1 (115-166)||(19897676-19897727)
chr1 (117-166)||(21641618-21641667)
chr1 (117-166)||(34370488-34370537)
chr1 (118-166)||(180825-180873)
chr1 (118-166)||(23920995-23921043)
chr1 (115-166)||(6314215-6314266)
chr1 (117-166)||(8401426-8401475)
chr1 (117-147)||(16116998-16117028)
chr1 (118-146)||(23319079-23319107)
[»] scaffold0571 (1 HSPs)
scaffold0571 (115-166)||(569-620)
[»] scaffold0338 (1 HSPs)
scaffold0338 (117-166)||(6484-6533)
[»] scaffold0581 (2 HSPs)
scaffold0581 (115-166)||(8337-8388)
scaffold0581 (67-107)||(8254-8294)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 7175815 - 7175928
Alignment:
Q  170 ataaacatgcatgcatagtcaatgtatatgcttcatgtgatgctagaagaaagaaagacttgtgagttgaattatcagttcagatatcggcacagaacgg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7175815 ataaacatgcatgcatagtcaatgtatatgcttcatgtgatgctagaagaaagaaagacttgtgagttgaattatcagttcagatatcggcacagaacgg 7175914  T
Q  270 ggaattgaggatag 283  Q
    ||||||||||||||    
T  7175915 ggaattgaggatag 7175928  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3925691 - 3925583
Alignment:
Q  1 agatgtgaaggagagtgtgggctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcccttatgca 100  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3925691 agatgtgaaggagagtgtgagccgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaaggacttatgca 3925592  T
Q  101 ccataactt 109  Q
    |||||||||    
T  3925591 ccataactt 3925583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 7175929 - 7176020
Alignment:
Q  314 aaggaacgggtcagagaaattaccataatggatgagatagaattcctttgacgaatttttcattgaaacaaagttgattgacttacctttac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7175929 aaggaacgggtcagagaaattaccataatggatgagatagaattcctttgacgaatttttcatagaaacaaagttgattgacttacctttac 7176020  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 1292143 - 1292095
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1292143 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 1292095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 18297241 - 18297192
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18297241 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 18297192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 39355136 - 39355185
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39355136 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 39355185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 7487221 - 7487170
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7487221 cactttggaggtgtaggaagcaattatgttgggatttatgcacggtgcataa 7487170  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 8149930 - 8149981
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  8149930 cactttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 8149981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 8154554 - 8154605
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  8154554 cactttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 8154605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 15016533 - 15016482
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  15016533 cactttgggggtgtaggaagcaattatgttgagatttatgcacggtgcataa 15016482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 9143684 - 9143726
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcac 157  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9143684 cactttgggggtgtaggaagcaattatgttggaatttatgcac 9143726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 2264625 - 2264673
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcata 165  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||    
T  2264625 ctttgggggtgtaggaagcaattatgttggaatttatgtactgtgcata 2264673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 34464810 - 34464861
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  34464810 cactttaggggtgtaggaagcaattatgtttggatttatgcacggtgcataa 34464861  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 25193962 - 25194011
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  25193962 ctttgggggtgtaggaaacaattatattgggatttatgcacggtgcataa 25194011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 18762936 - 18762987
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||  |||||||||||||||||||||| ||||||| |||||||||||    
T  18762936 cactttggaagtgtaggaagcaattatgttgggatttatgtacggtgcataa 18762987  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 4578625 - 4578590
Alignment:
Q  124 ggtgtaggaagcaattatgttggaatttatgcacgg 159  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4578625 ggtgtaggaagcaattatgttgggatttatgcacgg 4578590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 54751710 - 54751596
Alignment:
Q  1 agatgtgaaggagagtgtgggctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcccttatgca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54751710 agatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcacttatgca 54751611  T
Q  101 ccataacttataccc 115  Q
    |||||||||||||||    
T  54751610 ccataacttataccc 54751596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 13635692 - 13635641
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13635692 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 13635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 49426024 - 49425973
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49426024 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 49425973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 51921232 - 51921181
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51921232 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 51921181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 53441419 - 53441470
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53441419 cactttgggggtgtaggaagcaattatgttggaatttatgcccggtgcataa 53441470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 638965 - 639014
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  638965 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 639014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 10473619 - 10473668
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10473619 ctttgggggtgtaggaagcaattaggttggaatttatgcacggtgcataa 10473668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 26577334 - 26577285
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26577334 ctttgggggtgtaggaagcaattatgttgaaatttatgcacggtgcataa 26577285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 45256866 - 45256915
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45256866 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 45256915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 35291512 - 35291464
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35291512 tttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 35291464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 11786073 - 11786124
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11786073 cacttttggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 11786124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 11798240 - 11798291
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11798240 cactttaggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 11798291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 15051103 - 15051052
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  15051103 cactttgggggtgtaggaagcaattatgttaggatttatgcacggtgcataa 15051052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 27865704 - 27865653
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  27865704 cactttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 27865653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 30597798 - 30597849
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  30597798 cactctgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 30597849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 50644642 - 50644690
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  50644642 tttgggggtataggaagcaattatgttgggatttatgcacggtgcataa 50644690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 49492479 - 49492428
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||    
T  49492479 cactttaggagtgtaggaagcaattatgttgggatttatgcacggtgcataa 49492428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 51836400 - 51836351
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  51836400 ctttaggggtgtaggaagcaattatgttgggatttatgcacgatgcataa 51836351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 1621981 - 1622020
Alignment:
Q  121 gggggtgtaggaagcaattatgttggaatttatgcacggt 160  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  1621981 gggggtgtaggaagcaattatgttgggatttatgcacggt 1622020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 36011942 - 36011993
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  36011942 cactttaggggtgtaggaagcaattatgttgagatttatacacggtgcataa 36011993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 38245889 - 38245929
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcac 157  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  38245889 ctttgggggtgtaggaaacaattatgttgggatttatgcac 38245929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 46672544 - 46672588
Alignment:
Q  122 ggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||    
T  46672544 ggggtgtaggaagcaatcatgttgggatttatgcacgatgcataa 46672588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 9551654 - 9551626
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttgg 146  Q
    |||||||||||||||||||||||||||||    
T  9551654 tttgggggtgtaggaagcaattatgttgg 9551626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 54760972 - 54761012
Alignment:
Q  67 cttatgcagggtgcataagggaagcccttatgcaccataac 107  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  54760972 cttatgcagggtgcataaggaaaatccttatgcaccataac 54761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30411033 - 30411146
Alignment:
Q  1 agatgtgaaggagagtgtgggctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcccttatgca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30411033 agatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaaacccttatgca 30411132  T
Q  101 ccataacttatacc 114  Q
    ||||||||||||||    
T  30411133 ccataacttatacc 30411146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 14394567 - 14394618
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14394567 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 14394618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 14940323 - 14940272
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14940323 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 14940272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 26637804 - 26637753
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26637804 cactttaggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 26637753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 30783557 - 30783607
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30783557 cactttgggggtgtaggaagcaattatgttgg-atttatgcacggtgcataa 30783607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 37456779 - 37456830
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  37456779 cactttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 37456830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 28069320 - 28069271
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  28069320 ctttgggtgtgtaggaagcaattatgttggaatttatgctcggtgcataa 28069271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 34330157 - 34330206
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  34330157 ctttggggatgtatgaagcaattatgttggaatttatgcacggtgcataa 34330206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 3884002 - 3883951
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  3884002 cactttggaggtgtaggaagcaattatattgggatttatgcacggtgcataa 3883951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 15416763 - 15416814
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  15416763 cactttgggagtgtaggaagcaatcatgttgggatttatgcacggtgcataa 15416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 2826127 - 2826098
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttgg 146  Q
    ||||||||||||||||||||||||||||||    
T  2826127 ctttgggggtgtaggaagcaattatgttgg 2826098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 16667751 - 16667722
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttgg 146  Q
    ||||||||||||||||||||||||||||||    
T  16667751 ctttgggggtgtaggaagcaattatgttgg 16667722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 30404531 - 30404491
Alignment:
Q  67 cttatgcagggtgcataagggaagcccttatgcaccataac 107  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  30404531 cttatgcagggtgcataaggaaaatccttatgcaccataac 30404491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18022166 - 18022058
Alignment:
Q  1 agatgtgaaggagagtgtgggctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcccttatgca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18022166 agatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaaggacttatgca 18022067  T
Q  101 ccataactt 109  Q
    |||||||||    
T  18022066 ccataactt 18022058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 1149990 - 1149939
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1149990 cactttggaggtgtaggaagcaattatgttggaatttatgcacggtgcataa 1149939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 41099281 - 41099332
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41099281 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 41099332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 4835591 - 4835542
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4835591 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 4835542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 4841036 - 4840987
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4841036 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 4840987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 1209758 - 1209806
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1209758 tttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 1209806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 39657781 - 39657732
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39657781 ctttaggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 39657732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 2751207 - 2751255
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  2751207 tttgggggtgtaggaagcaattatgttgggattcatgcacggtgcataa 2751255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 10237453 - 10237504
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  10237453 cactttgggggtgtagaaagcaattatgttgggatttatacacggtgcataa 10237504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 34633288 - 34633237
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  34633288 cactttgagggtgtaagaagcaattatgttgggatttatgcacggtgcataa 34633237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 41451204 - 41451255
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  41451204 cactttggaggtgtaggaagcaattatgttgggatttatgcacagtgcataa 41451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 7857779 - 7857821
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcac 157  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  7857779 cactttgggggtgtaggaagcaattatgttgggatttatgcac 7857821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 7059144 - 7059185
Alignment:
Q  125 gtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  7059144 gtgtaggaaacaattatgttggaatttatgcacggtgcataa 7059185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 43690739 - 43690784
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggt 160  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  43690739 cactttgggggtgtagaaagcaattatgttgggatttatgcacggt 43690784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 30414024 - 30414064
Alignment:
Q  126 tgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  30414024 tgtaggaagcaattatgttgggatttatgcacggtgcataa 30414064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 19784370 - 19784421
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  19784370 cactttgagggtgtaggaagcaattatgttgggatttatgcacaatgcataa 19784421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 15227140 - 15227180
Alignment:
Q  126 tgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  15227140 tgtaggaagcaattatgttgggatttatgtacggtgcataa 15227180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9180044 - 9180152
Alignment:
Q  1 agatgtgaaggagagtgtgggctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagcccttatgca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9180044 agatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaaggacttatgca 9180143  T
Q  101 ccataactt 109  Q
    |||||||||    
T  9180144 ccataactt 9180152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9595947 - 9595896
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9595947 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 9595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 19384454 - 19384405
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19384454 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 19384405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 50755163 - 50755212
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50755163 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 50755212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 2941893 - 2941842
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  2941893 cactttgggggtgtagaaagcaattatgttgggatttatgcacggtgcataa 2941842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 9106366 - 9106417
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  9106366 cactttgggggtgtaggaagcaattatattgggatttatgcacggtgcataa 9106417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 19284770 - 19284821
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  19284770 cactttggggatgtaggaagcaattatgttgggatttatgcacggtgcataa 19284821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 26662505 - 26662454
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26662505 cactttgggggtgtaggaagcaattatgttgggatttatgcacagtgcataa 26662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 26960725 - 26960776
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  26960725 cactttgggggtgtaggaagcaattatattgggatttatgcacggtgcataa 26960776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 30947878 - 30947827
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  30947878 cacttttggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 30947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 47335131 - 47335182
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  47335131 cactttgggggtgtaggaaacaattatgttgggatttatgcacggtgcataa 47335182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 3475374 - 3475323
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  3475374 cactttggagatgtaggaagcaattatgttgggatttatgcacggtgcataa 3475323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 6097643 - 6097600
Alignment:
Q  123 gggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6097643 gggtgtaggaagcaattatgttgggatttatgcacggtgcataa 6097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 33413980 - 33413929
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  33413980 cactttgagggtgtaggaagcaattatattgggatttatgcacggtgcataa 33413929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 54379265 - 54379312
Alignment:
Q  119 ttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  54379265 ttggaggtgtaggaagcaattatgttgggatttatgcacggtgcataa 54379312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 31853164 - 31853206
Alignment:
Q  124 ggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  31853164 ggtgtaggaagcaattatgttgggatttatgcacggtgcataa 31853206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 7044430 - 7044387
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggt 160  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  7044430 ctttgggggtgtaagaagcaattatgttagaatttatgcacggt 7044387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 10986451 - 10986502
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| || ||||||||||||||||||||  |||||||||||||||||||    
T  10986451 cactttgaggatgtaggaagcaattatgttgagatttatgcacggtgcataa 10986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 46237725 - 46237674
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| ||||    
T  46237725 cactttgggggagtatgaagcaattatgttgggatttatgcacggtgtataa 46237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 51361596 - 51361547
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  51361596 ctttaggggtgtaggaagcaattatgttaggatttatacacggtgcataa 51361547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 47729134 - 47729162
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttgg 146  Q
    |||||||||||||||||||||||||||||    
T  47729134 tttgggggtgtaggaagcaattatgttgg 47729162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 24373 - 24424
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24373 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 24424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 33783 - 33834
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33783 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 33834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 46358619 - 46358670
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46358619 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 46358670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 47340246 - 47340297
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47340246 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 47340297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 30884189 - 30884138
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  30884189 cactttgggggtgtaggaagcaattatgttaggatttatgcacggtgcataa 30884138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 31660168 - 31660219
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  31660168 cactttgggggtgtaggaagcaattatgttgagatttatgcacggtgcataa 31660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 35737047 - 35737098
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  35737047 cactttggggatgtaggaagcaattatgttgggatttatgcacggtgcataa 35737098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 41911079 - 41911028
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  41911079 cactttgagggtgtaggaagcaattatgttgggatttatgcacggtgcataa 41911028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 763798 - 763847
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  763798 ctttgggggtgtaggaagcaattatgttgggatttatgcacagtgcataa 763847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 46572647 - 46572598
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  46572647 ctttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 46572598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 48692021 - 48692070
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  48692021 ctttggaggtgtaggaagcaattatgttgggatttatgcacggtgcataa 48692070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 16933204 - 16933159
Alignment:
Q  121 gggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  16933204 gggggtgtaggaagcaattatgttgagatttatgcacggtgcataa 16933159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 16938587 - 16938542
Alignment:
Q  121 gggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  16938587 gggggtgtaggaagcaattatgttgagatttatgcacggtgcataa 16938542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 15973933 - 15973884
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||| |||||||||||||||| |||||||| ||||||||| |||||||||    
T  15973933 ctttaggggtgtaggaagcaactatgttgggatttatgcatggtgcataa 15973884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 32685917 - 32685868
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||| |||||||||||||||||||||||  |||||||||||||| ||||    
T  32685917 ctttgagggtgtaggaagcaattatgttgagatttatgcacggtgtataa 32685868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 48306331 - 48306372
Alignment:
Q  124 ggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  48306331 ggtgtaggaag-aattatgttgggatttatgcacggtgcataa 48306372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 6900902 - 6900953
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6900902 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 6900953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 15493273 - 15493324
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15493273 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 15493324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 1449641 - 1449692
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1449641 cactttgggggtgtaggaaacaattatgttgggatttatgcacggtgcataa 1449692  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 7089181 - 7089232
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7089181 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtacataa 7089232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 1536861 - 1536814
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcat 164  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  1536861 ctttgggggtgtaggaagcaattatattgggatttatgcacggtgcat 1536814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 31216761 - 31216812
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  31216761 cactttaggggtgtaggaagcaattatgttggaatttatacacggtccataa 31216812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 34870030 - 34869979
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  34870030 cactttggaggtgtaggaagcaattatgttaggatttatgcacggtgcataa 34869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 35121490 - 35121538
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35121490 ctttgggggtgtag-aagcaattatgttgggatttatgcacggtgcataa 35121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 878365 - 878410
Alignment:
Q  121 gggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||    
T  878365 gggggtgtaggaagtaattatgttgggatttatgcacggtacataa 878410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 33345408 - 33345360
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  33345408 ctttggaggtgtag-aagcaattatgttgggatttatgcacggtgcataa 33345360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 24736608 - 24736574
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaattt 151  Q
    |||||||||||||||||||||||||||||| ||||    
T  24736608 ctttgggggtgtaggaagcaattatgttgggattt 24736574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 24736644 - 24736610
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaattt 151  Q
    |||||||||||||||||||||||||||||| ||||    
T  24736644 ctttgggggtgtaggaagcaattatgttgggattt 24736610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 15007573 - 15007533
Alignment:
Q  67 cttatgcagggtgcataagggaagcccttatgcaccataac 107  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  15007573 cttatgcagggtgcataaggaaaatccttatgcaccataac 15007533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 18618934 - 18618985
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18618934 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 18618985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 24636025 - 24636076
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24636025 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 24636076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 49936904 - 49936853
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49936904 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 49936853  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 50351902 - 50351953
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50351902 cactttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 50351953  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 11422541 - 11422590
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11422541 ctttgggggtgtaggaagcaattatgttggaatttatgcacgatgcataa 11422590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 23174475 - 23174426
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23174475 ctttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 23174426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 23817412 - 23817460
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23817412 tttgggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 23817460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 16976054 - 16976105
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  16976054 cactttgggggtgtaggaagcaattatgttaggatttatgcacggtgcataa 16976105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 20434689 - 20434638
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  20434689 cactttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 20434638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 25888995 - 25888944
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  25888995 cactttgggggtgtaggaagcaattatgttaggatttatgcacggtgcataa 25888944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 43452641 - 43452692
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  43452641 cactttgggggtgtaggaaacaattatgttgggatttatgcacggtgcataa 43452692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 48762298 - 48762247
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  48762298 cactttaggggtgtaggaagcaattatgttgggatttatgcacggtgcataa 48762247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 4097182 - 4097133
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  4097182 ctttgggggtgtaggaagcaattatgttgggatttaagcacggtgcataa 4097133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 19897727 - 19897676
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  19897727 cactttggaggtgtaggaagcaattatgttgggatttctgcacggtgcataa 19897676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 21641667 - 21641618
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  21641667 ctttggtggtgtaggaagcaattatgttgggatttgtgcacggtgcataa 21641618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 34370488 - 34370537
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  34370488 ctttggaggtgtaggaagcaattatgttaggatttatgcacggtgcataa 34370537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 180825 - 180873
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  180825 tttgggagtgtaggaagcaattatgttgggatttatacacggtgcataa 180873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23921043 - 23920995
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  23921043 tttgggggtgtaggaaacaattatgttgggatttatgcacgatgcataa 23920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 6314215 - 6314266
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||| ||||||||||||||||||||| ||||||  |||||||||||    
T  6314215 cactttggggatgtaggaagcaattatgttgggatttatatacggtgcataa 6314266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 8401475 - 8401426
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||| |||||||||| |||||||||||| ||||||||||||| |||||    
T  8401475 ctttggaggtgtaggaaacaattatgttgggatttatgcacggtacataa 8401426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 16116998 - 16117028
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttgga 147  Q
    |||||||||||||||||||||||||||||||    
T  16116998 ctttgggggtgtaggaagcaattatgttgga 16117028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 23319107 - 23319079
Alignment:
Q  118 tttgggggtgtaggaagcaattatgttgg 146  Q
    |||||||||||||||||||||||||||||    
T  23319107 tttgggggtgtaggaagcaattatgttgg 23319079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 620 - 569
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  620 cactttgggggtgtaggaagcaattatattgggatttatgcacggtgcataa 569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 6484 - 6533
Alignment:
Q  117 ctttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  6484 ctttgggggtgtaggaagcaattatgttgggatttatgcatggtgcataa 6533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 8388 - 8337
Alignment:
Q  115 cactttgggggtgtaggaagcaattatgttggaatttatgcacggtgcataa 166  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  8388 cactttgagggtgtagaaagcaattatgttgggatttatgcacggtgcataa 8337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 8254 - 8294
Alignment:
Q  67 cttatgcagggtgcataagggaagcccttatgcaccataac 107  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  8254 cttatgcagggtgcataaggaaaatccttatgcaccataac 8294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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