View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_high_35 (Length: 258)
Name: NF17441_high_35
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_high_35 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 16029 - 15772
Alignment:
| Q |
1 |
tagatggtatgctacatcctctttgttgaatcttttcatcagtaggtaatttgtcatgaataactctccaagttagcagagacttagaaggagatatgtt |
100 |
Q |
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| T |
16029 |
tagatggtatgctacatcctctttgttgaatcttttcatcagtaggtaacttgtcatgaataactctctaagttagcagagacttagaaggaggtatgtt |
15930 |
T |
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| Q |
101 |
tatgctccaaatattcttggcccaatgatgagtagttgagttgaaggttggttaaggaaagaatatgtgtcacataatctaagaaccccatttgggttat |
200 |
Q |
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| T |
15929 |
tatgctccaaatattcttggcccaatgatgagtagttgagttgaaggttggttaaggaaagaatatgtgtcacataatctgagaacctcatttgggttat |
15830 |
T |
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| Q |
201 |
gagtccaaactagtctatcttctaactcttcaatagggatggtaaaatgcataatcat |
258 |
Q |
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| T |
15829 |
gagtccaaactagtctatcttccaactcttcaatagggatggtaaaatgcataatcat |
15772 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 28716151 - 28716075
Alignment:
| Q |
15 |
catcctctttgttgaatcttttcatcagtaggtaatttgtcatgaataactctccaagttagcagagacttagaagg |
91 |
Q |
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||||||||||| || | |||||||| || |||| ||||||||| ||||||||||| ||||| || ||||| ||||| |
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| T |
28716151 |
catcctctttgctgcaatttttcatcggttggtactttgtcatggataactctccaggttagaagggactttgaagg |
28716075 |
T |
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