View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_high_5 (Length: 569)
Name: NF17441_high_5
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 42307579 - 42307028
Alignment:
| Q |
1 |
tgttaaatgccaccctattggctttgtagactagtgcttttgtattgcttatggtgtgtgctannnnnnncgtttgaagtgttgcacctctttttgtagt |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42307579 |
tgttaaatgccaccctattggctttgtagactaatgcttttgtattgcttatggtgtgtgctatttttttcgtttgaagtgttgcacctctttttgtagt |
42307480 |
T |
|
| Q |
101 |
gagttgtagtagtactcattgtactcttgtttacattataattatagatctttctcgttaaaagaaaaaacacacacattgagacatgatccttggttca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307479 |
gagttgtagta---ctcattgtactcttgtttacattataattatagatctttctcgttaaaagaaaaaacacacacattgagacatgatccttggttca |
42307383 |
T |
|
| Q |
201 |
catatatataatatagtggtcnnnnnnnaatcttttgagaagcattattcttctatttcttttaggtttctcttaaaagtgctgtcaaattcacttttaa |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307382 |
catatatataatatagtggtctttttttaatcttttgagaagcattattcttctatttcttttaggtttctcttaaaagtgctgtcaaattcacttttaa |
42307283 |
T |
|
| Q |
301 |
actaaattttatttgtacggagaaaggtaaaccaaaactaattagtagaaacaaataaacacagattatttttatcacaagaatagtaatataaaaggag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307282 |
actaaattttatttgtacggagaaaggtaaaccaaaaataattagtagaaacaaataaacacagattatttttatcacaagaatagtaatataaaaggag |
42307183 |
T |
|
| Q |
401 |
tcatagatgaaagggacatattactataataggggatatatatttatttagtttgtgagtcagcttgatacaaagccgaactttgaaaattacaatgcat |
500 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307182 |
tcatagatgaaagggacagattactataataggggatatatatttatttagtttgtgagtcagcttgatacaaagccgaactttgaaaattacaatgcat |
42307083 |
T |
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| Q |
501 |
gaaaacaactgcagacacatgcatattggggcagtgccttacagctgtggataat |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307082 |
gaaaacaactgcagacacatgcatattggggcagtgccttacagctgtggataat |
42307028 |
T |
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