View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_high_6 (Length: 568)

Name: NF17441_high_6
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_high_6
NF17441_high_6
[»] chr4 (36 HSPs)
chr4 (18-552)||(44189793-44190324)
chr4 (489-532)||(39810731-39810774)
chr4 (483-549)||(12094994-12095060)
chr4 (483-549)||(27284108-27284174)
chr4 (453-549)||(2824827-2824926)
chr4 (453-528)||(19480540-19480618)
chr4 (483-546)||(2565425-2565488)
chr4 (500-547)||(12076441-12076488)
chr4 (490-549)||(22611908-22611967)
chr4 (491-549)||(13967889-13967947)
chr4 (452-545)||(41142309-41142405)
chr4 (488-549)||(4860158-4860219)
chr4 (491-546)||(30694330-30694382)
chr4 (489-549)||(31861439-31861499)
chr4 (486-549)||(16341113-16341176)
chr4 (452-546)||(20775074-20775171)
chr4 (489-540)||(31991478-31991529)
chr4 (489-552)||(43970054-43970117)
chr4 (483-546)||(45921353-45921416)
chr4 (478-548)||(7437841-7437911)
chr4 (483-545)||(31089800-31089861)
chr4 (483-549)||(37431793-37431859)
chr4 (452-549)||(48419075-48419175)
chr4 (490-551)||(28740328-28740389)
chr4 (487-536)||(35395345-35395394)
chr4 (489-545)||(42595199-42595255)
chr4 (480-543)||(19147165-19147228)
chr4 (458-540)||(22019611-22019696)
chr4 (483-530)||(44639904-44639951)
chr4 (488-546)||(13715578-13715635)
chr4 (504-546)||(31089530-31089572)
chr4 (496-546)||(31373630-31373680)
chr4 (488-546)||(53142822-53142880)
chr4 (489-546)||(51100040-51100097)
chr4 (483-536)||(55090816-55090869)
chr4 (491-547)||(27133593-27133649)
[»] chr5 (22 HSPs)
chr5 (486-549)||(30293834-30293897)
chr5 (489-546)||(11815953-11816010)
chr5 (453-542)||(30840616-30840707)
chr5 (483-549)||(36482087-36482153)
chr5 (483-549)||(27544625-27544691)
chr5 (489-549)||(18242481-18242541)
chr5 (483-543)||(8151812-8151874)
chr5 (483-546)||(12036322-12036385)
chr5 (452-549)||(22293986-22294086)
chr5 (483-546)||(16802063-16802126)
chr5 (483-526)||(32144802-32144845)
chr5 (483-546)||(41645068-41645131)
chr5 (489-546)||(6102870-6102927)
chr5 (489-537)||(2089139-2089187)
chr5 (483-546)||(2611162-2611226)
chr5 (483-526)||(14044714-14044757)
chr5 (488-546)||(8400180-8400238)
chr5 (488-534)||(14863377-14863423)
chr5 (496-545)||(1920761-1920810)
chr5 (488-545)||(42491681-42491738)
chr5 (486-546)||(1056848-1056908)
chr5 (489-533)||(39034478-39034522)
[»] chr8 (38 HSPs)
chr8 (483-546)||(3137436-3137499)
chr8 (483-549)||(3347522-3347588)
chr8 (483-549)||(44648949-44649015)
chr8 (486-546)||(34678221-34678281)
chr8 (490-546)||(12201835-12201891)
chr8 (490-546)||(12446263-12446319)
chr8 (489-549)||(20542429-20542489)
chr8 (496-548)||(25250349-25250401)
chr8 (491-549)||(10029206-10029264)
chr8 (493-546)||(37561513-37561566)
chr8 (489-549)||(18045325-18045385)
chr8 (489-549)||(18200692-18200752)
chr8 (489-549)||(33621408-33621468)
chr8 (483-546)||(17720192-17720255)
chr8 (452-549)||(18647472-18647571)
chr8 (452-549)||(35901427-35901527)
chr8 (489-549)||(11150964-11151024)
chr8 (491-543)||(12981605-12981657)
chr8 (501-549)||(31331055-31331103)
chr8 (489-549)||(43917629-43917689)
chr8 (483-547)||(547098-547166)
chr8 (504-547)||(1342378-1342421)
chr8 (496-542)||(30076215-30076261)
chr8 (483-545)||(40489886-40489948)
chr8 (487-549)||(41726936-41726998)
chr8 (486-546)||(4989734-4989794)
chr8 (489-549)||(32881155-32881215)
chr8 (491-526)||(8866998-8867033)
chr8 (483-537)||(600408-600462)
chr8 (483-549)||(6270161-6270226)
chr8 (498-536)||(44947398-44947436)
chr8 (496-537)||(600538-600579)
chr8 (489-546)||(12987655-12987712)
chr8 (489-546)||(18131233-18131290)
chr8 (489-546)||(40607340-40607397)
chr8 (489-542)||(44655252-44655305)
chr8 (483-535)||(27506971-27507023)
chr8 (494-546)||(33810077-33810128)
[»] chr7 (33 HSPs)
chr7 (489-548)||(19677037-19677096)
chr7 (483-549)||(16979978-16980044)
chr7 (489-549)||(8896609-8896669)
chr7 (453-540)||(34993148-34993238)
chr7 (483-549)||(23142664-23142729)
chr7 (502-546)||(31249568-31249612)
chr7 (490-549)||(43118849-43118908)
chr7 (488-546)||(18037864-18037922)
chr7 (483-540)||(12810167-12810224)
chr7 (496-549)||(18756912-18756965)
chr7 (486-527)||(23080658-23080699)
chr7 (452-546)||(31850762-31850860)
chr7 (452-545)||(18221001-18221098)
chr7 (489-545)||(31487725-31487781)
chr7 (483-545)||(16685768-16685831)
chr7 (483-545)||(17660004-17660067)
chr7 (483-546)||(37928336-37928399)
chr7 (491-546)||(47445370-47445425)
chr7 (453-546)||(21515022-21515118)
chr7 (489-547)||(43626389-43626447)
chr7 (489-546)||(22555747-22555804)
chr7 (512-549)||(34993109-34993146)
chr7 (496-546)||(41064315-41064369)
chr7 (489-545)||(11740376-11740432)
chr7 (483-543)||(30028000-30028062)
chr7 (483-546)||(45907048-45907111)
chr7 (491-545)||(8746180-8746234)
chr7 (502-540)||(28012890-28012928)
chr7 (489-546)||(21164673-21164730)
chr7 (489-546)||(25530559-25530616)
chr7 (489-546)||(39786466-39786523)
chr7 (483-536)||(47537461-47537514)
chr7 (501-549)||(1309735-1309783)
[»] chr3 (24 HSPs)
chr3 (489-552)||(49261822-49261885)
chr3 (483-549)||(29032448-29032514)
chr3 (489-549)||(6785805-6785865)
chr3 (489-549)||(44698260-44698320)
chr3 (489-549)||(4020140-4020200)
chr3 (452-546)||(28709580-28709677)
chr3 (483-549)||(635716-635782)
chr3 (494-548)||(3215088-3215142)
chr3 (483-549)||(55446768-55446834)
chr3 (437-547)||(50958846-50958960)
chr3 (483-549)||(42437727-42437791)
chr3 (483-546)||(48338849-48338912)
chr3 (489-547)||(8326179-8326237)
chr3 (491-545)||(34145920-34145974)
chr3 (491-540)||(1711944-1711993)
chr3 (496-549)||(11676747-11676800)
chr3 (489-549)||(54801341-54801401)
chr3 (491-549)||(12109694-12109752)
chr3 (496-548)||(48138107-48138160)
chr3 (497-549)||(25958070-25958122)
chr3 (483-526)||(26613099-26613142)
chr3 (96-159)||(5388372-5388437)
chr3 (452-545)||(27639498-27639594)
chr3 (505-546)||(25319521-25319562)
[»] chr1 (37 HSPs)
chr1 (450-552)||(33148139-33148244)
chr1 (483-549)||(10226473-10226539)
chr1 (483-546)||(8001761-8001824)
chr1 (483-546)||(32187089-32187152)
chr1 (483-549)||(26829528-26829594)
chr1 (458-549)||(11449068-11449162)
chr1 (489-549)||(13969110-13969170)
chr1 (450-549)||(46295882-46295984)
chr1 (452-549)||(17169281-17169381)
chr1 (483-549)||(5069532-5069598)
chr1 (488-541)||(37494212-37494265)
chr1 (489-549)||(27688521-27688581)
chr1 (510-552)||(3529434-3529476)
chr1 (505-546)||(5069761-5069802)
chr1 (493-537)||(15398272-15398316)
chr1 (489-537)||(40699292-40699340)
chr1 (488-547)||(30109268-30109327)
chr1 (483-546)||(31160762-31160825)
chr1 (483-534)||(40391244-40391295)
chr1 (483-546)||(48282905-48282968)
chr1 (505-543)||(8279794-8279832)
chr1 (483-537)||(26855850-26855904)
chr1 (483-545)||(31262785-31262847)
chr1 (515-549)||(39993446-39993480)
chr1 (483-545)||(48579932-48579994)
chr1 (500-546)||(50015789-50015835)
chr1 (489-546)||(27540-27597)
chr1 (489-546)||(39238873-39238930)
chr1 (493-546)||(52762316-52762369)
chr1 (501-549)||(17644782-17644830)
chr1 (504-540)||(35542765-35542801)
chr1 (490-546)||(37597146-37597202)
chr1 (491-547)||(46836243-46836299)
chr1 (494-546)||(47496864-47496915)
chr1 (483-535)||(48502602-48502654)
chr1 (491-543)||(49731179-49731231)
chr1 (483-546)||(52429664-52429727)
[»] chr2 (32 HSPs)
chr2 (483-552)||(13717214-13717282)
chr2 (489-545)||(4978767-4978823)
chr2 (489-545)||(4996675-4996731)
chr2 (485-552)||(32909413-32909480)
chr2 (483-549)||(18717886-18717952)
chr2 (483-549)||(23453381-23453447)
chr2 (483-549)||(38024192-38024257)
chr2 (483-549)||(40574154-40574220)
chr2 (483-549)||(3689630-3689694)
chr2 (491-546)||(8580556-8580611)
chr2 (483-549)||(40346744-40346810)
chr2 (504-549)||(1004786-1004831)
chr2 (489-546)||(1870508-1870565)
chr2 (488-545)||(7141155-7141212)
chr2 (489-546)||(13738409-13738466)
chr2 (489-549)||(4186414-4186474)
chr2 (489-530)||(6315929-6315970)
chr2 (452-544)||(28331270-28331365)
chr2 (489-545)||(43131774-43131830)
chr2 (490-549)||(4557615-4557674)
chr2 (483-546)||(5444506-5444569)
chr2 (459-549)||(7932902-7932995)
chr2 (491-546)||(14953068-14953123)
chr2 (489-544)||(19050007-19050062)
chr2 (491-549)||(6462602-6462660)
chr2 (483-545)||(27896499-27896561)
chr2 (452-549)||(41436327-41436427)
chr2 (489-534)||(481456-481501)
chr2 (491-540)||(8312422-8312471)
chr2 (489-546)||(13835878-13835935)
chr2 (483-536)||(33635549-33635602)
chr2 (486-546)||(44032159-44032219)
[»] chr6 (18 HSPs)
chr6 (452-549)||(32134048-32134148)
chr6 (463-546)||(5611143-5611229)
chr6 (492-546)||(2613366-2613420)
chr6 (489-540)||(17453993-17454044)
chr6 (483-538)||(18493279-18493334)
chr6 (486-550)||(1397066-1397131)
chr6 (489-542)||(10008235-10008288)
chr6 (483-548)||(17345854-17345919)
chr6 (491-543)||(2911484-2911536)
chr6 (483-546)||(2398044-2398107)
chr6 (504-546)||(227392-227434)
chr6 (491-549)||(17834987-17835045)
chr6 (483-547)||(33121324-33121388)
chr6 (483-546)||(6770870-6770933)
chr6 (453-537)||(19320294-19320382)
chr6 (483-521)||(8636783-8636821)
chr6 (491-537)||(30929540-30929586)
chr6 (491-547)||(2470395-2470451)
[»] scaffold0204 (1 HSPs)
scaffold0204 (497-546)||(15380-15429)
[»] scaffold0002 (1 HSPs)
scaffold0002 (497-549)||(120719-120771)
[»] scaffold0329 (1 HSPs)
scaffold0329 (489-545)||(7401-7456)
[»] scaffold0283 (1 HSPs)
scaffold0283 (498-546)||(3376-3424)
[»] scaffold0039 (1 HSPs)
scaffold0039 (489-549)||(29998-30058)
[»] scaffold0036 (1 HSPs)
scaffold0036 (491-547)||(36576-36632)
[»] scaffold0079 (1 HSPs)
scaffold0079 (486-549)||(51685-51748)
[»] scaffold0886 (1 HSPs)
scaffold0886 (483-546)||(1119-1182)
[»] scaffold0299 (1 HSPs)
scaffold0299 (483-546)||(18030-18093)
[»] scaffold0957 (1 HSPs)
scaffold0957 (509-549)||(1925-1964)
[»] scaffold0117 (1 HSPs)
scaffold0117 (486-534)||(16856-16904)
[»] scaffold0103 (1 HSPs)
scaffold0103 (489-549)||(28860-28920)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 44189793 - 44190324
Alignment:
Q  18 atgatggtattcggtctcgagtaaactgcctagtgcatcaaagcatagaacagctaaactaaaacccttttaaaaatctaattatgaggacctaatccaa 117  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44189793 atgatggtattcagtctcgagtaaactgcccagtgcatcaaagcataaaacagctaaactaaaacccttttaaaa-tctaattatgaggacctaatccaa 44189891  T
Q  118 tctagatattgagggaggggcagtgctcgtgatcagcttctagatattgcaactacatccaaagactaaaacaaacaatgaatatagatgttacatgtac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |    
T  44189892 tctagatattgagggaggggcagtgctcgtgatcagcttctagatattgcaactacatccaaagactaaaacaaacaatgaata--gatgttacatgtgc 44189989  T
Q  218 aactacatccaaaaagatgttacacgtgcagctcataacaacattggccaaattataaattcacatacggaggattggaggagacgtggactgagacacc 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44189990 aactacatccaaaaagatgttacacgtgcagctcagaacaacattggccaaattataaattcacatacggaggattggaggagacgtggactgagacacc 44190089  T
Q  318 tagtgaaccaaagactatgtctggcatttaatgtgattcatatgttaaagggaggctcgttatgttaattaaatgggttttgttaccatttccctcatta 417  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  44190090 tagtgaaccaaagactatgtttggcatttaatgtgattcatatgttaaagggaggctcgttatgttaattaaatggattttgctaccatttccctaatta 44190189  T
Q  418 aataaataatgaattaaggagaatgataaccattgttaagcatttaaaacaagtaag-tttcgaataagttatgtaattattacttgatcaaaagtaaca 516  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44190190 aataaataatgaattaaggagaatgataaccattgttaagca-ttcaaacaagtaagttttcgaataagttatgtaattattacttgatcaaaagtaaca 44190288  T
Q  517 tcttatattttcaagacaaaatttctatttgtatat 552  Q
    |||||||||||||||| ||||||| |||||||||||    
T  44190289 tcttatattttcaagataaaatttatatttgtatat 44190324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 532
Target Start/End: Complemental strand, 39810774 - 39810731
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaaga 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39810774 tgtaattattacttgatcaaaagtaacatcttatattttcaaga 39810731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 12094994 - 12095060
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| ||||||||||| |||||||||||||||  |||||||||||||||||    
T  12094994 aagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgta 12095060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 27284108 - 27284174
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| || ||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27284108 aagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttctatatgta 27284174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 549
Target Start/End: Complemental strand, 2824926 - 2824827
Alignment:
Q  453 ttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||| ||||||||| ||||||    ||| | ||| |||||| ||||||||||||||||||||||||||||||  |||||||||| | |||||||||    
T  2824926 ttaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagtgctatttgta 2824827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 453 - 528
Target Start/End: Original strand, 19480540 - 19480618
Alignment:
Q  453 ttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttc 528  Q
    ||||| |||||||||||||||||||    ||| ||||| |||||| ||||||| |||||||||||||||||||||||||    
T  19480540 ttaagaatttaaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttc 19480618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 2565488 - 2565425
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||||| ||||||| |||||    
T  2565488 aagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaatttatattt 2565425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 12076488 - 12076441
Alignment:
Q  500 cttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  12076488 cttgatcaaaattaacatcttatattttcaagacaaaatttttatttg 12076441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 22611967 - 22611908
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| ||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||    
T  22611967 gtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgta 22611908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 13967889 - 13967947
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||| |||||||||| |||| ||||||||||||||  ||||||||||||||||||||||    
T  13967889 taatcattacttgataaaaaataacatcttatattaccaagacaaaatttctatttgta 13967947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 41142405 - 41142309
Alignment:
Q  452 gttaagcatttaaaacaagtaagttt---cgaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||| ||||||||||| |||   | || |||| |||||||||||| || ||||||||||| | ||||| ||||||||||||||||| ||||    
T  41142405 gttaagcattcaaaacaagtaaattttcacaaaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttatt 41142309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 549
Target Start/End: Original strand, 4860158 - 4860219
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||||| ||||||||| | | ||||||||||||| ||||| ||||||||||||    
T  4860158 atgtaattattacttaatcaaaagtcaaaacttatattttcaaaacaaattttctatttgta 4860219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 30694330 - 30694382
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||    
T  30694330 taattattacttgatcaaaa---acaacttatattttcaagacaaaatttctattt 30694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 31861499 - 31861439
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||||||||||||||||||||||||||| ||| | ||||||| ||| ||||    
T  31861499 tgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttatatgta 31861439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 16341176 - 16341113
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  ||||||||| || ||||||||    
T  16341176 ttatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgta 16341113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 546
Target Start/End: Original strand, 20775074 - 20775171
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||  |||||||||||||||    ||| |||||||||||| |||| |||||||||| ||| |||||||||||  |||||||| ||| |||||    
T  20775074 gttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttattt 20775171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 31991529 - 31991478
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    |||||||||||||| ||||||| |||||||||||||||||||  ||||||||    
T  31991529 tgtaattattactttatcaaaaataacatcttatattttcaaagcaaaattt 31991478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 552
Target Start/End: Complemental strand, 43970117 - 43970054
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgtatat 552  Q
    |||||||||||| | || ||||||||||||||||||||| |||| ||||||| |||| ||||||    
T  43970117 tgtaattattacataattaaaagtaacatcttatatttttaagataaaatttatattcgtatat 43970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 45921416 - 45921353
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||||||||||| ||||| ||| | | ||||||||||||||||||| |||||||||    
T  45921416 aagttgtgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctattt 45921353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 548
Target Start/End: Complemental strand, 7437911 - 7437841
Alignment:
Q  478 cgaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||| ||||| |||||| || ||||| |||||||||||||||||||||| ||||||| | ||| |||||||    
T  7437911 cgaaaaagttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttttatttgt 7437841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 31089861 - 31089800
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||| |||||| ||||||| |||||||||||||| |||||||| | ||||||||||||||||    
T  31089861 aagttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctatt 31089800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 37431859 - 37431793
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| || ||||||||||| || ||||||||||||||||| ||| |||| ||||||| ||||||||    
T  37431859 aagttgtgcaattattacttaattaaaagtaacatcttataattttaagataaaatttttatttgta 37431793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 549
Target Start/End: Original strand, 48419075 - 48419175
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||||||| ||||||||||||||||    ||| ||||| || ||| ||||||| |||||||||||  | ||| |||| ||| |||||||||||||||||    
T  48419075 gttaagcatataaaacaagtaagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaaagttttacatttccaaaacaaaatttctatttgt 48419174  T
Q  549 a 549  Q
    |    
T  48419175 a 48419175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 551
Target Start/End: Original strand, 28740328 - 28740389
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgtata 551  Q
    ||||| ||||||| ||||||| || |||||||||||||||||| ||||||| ||||| ||||    
T  28740328 gtaatcattactttatcaaaaatatcatcttatattttcaagataaaatttatatttatata 28740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 536
Target Start/End: Complemental strand, 35395394 - 35395345
Alignment:
Q  487 tatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaa 536  Q
    ||||||||||||| ||||| ||||||||||||||||||||| || |||||    
T  35395394 tatgtaattattatttgattaaaagtaacatcttatatttttaaaacaaa 35395345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 42595255 - 42595199
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||| ||||||| |||||||||||||| |||||||||||| ||||| ||| ||||    
T  42595255 tgtaatcattactttatcaaaagtaacattttatattttcaaaacaaattttatatt 42595199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 19147228 - 19147165
Alignment:
Q  480 aataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    ||||||| |||||||||||| ||||| |||||| |||  |||||||||||||||| || |||||    
T  19147228 aataagtaatgtaattattatttgataaaaagtgacagtttatattttcaagacagaaattcta 19147165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 22019611 - 22019696
Alignment:
Q  458 catttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    |||| |||||||||||||||    ||| ||||| |||||| ||||||| ||  ||| |||||||||||||||| ||||||||||||    
T  22019611 cattcaaaacaagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattt 22019696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Original strand, 44639904 - 44639951
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaa 530  Q
    ||||| |||||| ||||||| |||||||||||||||||||||| ||||    
T  44639904 aagttgtgtaatcattacttaatcaaaagtaacatcttatattctcaa 44639951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 546
Target Start/End: Complemental strand, 13715635 - 13715578
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||| ||||    
T  13715635 atgtaatcattacttgatcaaaa-taatatcttatatttccaaaacaaaatttcaattt 13715578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 546
Target Start/End: Complemental strand, 31089572 - 31089530
Alignment:
Q  504 atcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||||||||||||  ||||||||||| |||||    
T  31089572 atcaaaagtaacatcttatattttttagacaaaatttttattt 31089530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 31373680 - 31373630
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| || |||| || ||||||||||||| ||||||||||||||||||    
T  31373680 attacttaataaaaaatatcatcttatatttttaagacaaaatttctattt 31373630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 546
Target Start/End: Original strand, 53142822 - 53142880
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||| ||||||||| | | |||||||||||| |||||| ||| |||||    
T  53142822 atgtaattattacttaatcaaaagttaaaacttatattttcatgacaaattttttattt 53142880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 51100097 - 51100040
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||||| | | ||||||||||||| | ||| |||||||||    
T  51100097 tgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttctattt 51100040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 55090816 - 55090869
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaa 536  Q
    ||||| ||||||||| |||| ||||||||| | | |||||||||||||||||||    
T  55090816 aagttgtgtaattataacttaatcaaaagtcaaaacttatattttcaagacaaa 55090869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 27133593 - 27133649
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||| ||||||||| ||||| ||| |||||||||||  |||||||| ||||||||||    
T  27133593 taatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttg 27133649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 30293897 - 30293834
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30293897 ttatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgta 30293834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 11815953 - 11816010
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11815953 tgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctattt 11816010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 453 - 542
Target Start/End: Complemental strand, 30840707 - 30840616
Alignment:
Q  453 ttaagcatttaaaacaagtaagttt--cgaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttct 542  Q
    ||||||||  |||||||||||||||    || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  30840707 ttaagcatccaaaacaagtaagttttcaaaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttct 30840616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 36482087 - 36482153
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36482087 aagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgta 36482153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 27544625 - 27544691
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  27544625 aagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgta 27544691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 18242481 - 18242541
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||    
T  18242481 tgtaatcattactagatcaaaagtcgcatcttatattttcaagacaaaatttctacttgta 18242541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 543
Target Start/End: Complemental strand, 8151874 - 8151812
Alignment:
Q  483 aagttatgtaattatta--cttgatcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    ||||||| |||||||||  |||||| |||||||||||||||||||||||| ||||||||||||    
T  8151874 aagttatataattattatacttgattaaaagtaacatcttatattttcaaaacaaaatttcta 8151812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 12036385 - 12036322
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||||| ||||||||| | | ||||||||||||||||||| |||||||||    
T  12036385 aagtaatgtaattattacttaatcaaaagtcaaaacttatattttcaagacaaattttctattt 12036322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 549
Target Start/End: Original strand, 22293986 - 22294086
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||| |||| |||||||||||||||    ||| ||||| || ||| |||| ||||||||||  || ||||||||||| |||||||||||||||||||||    
T  22293986 gttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaaccaatatcttatatttccaagacaaaatttctatttgt 22294085  T
Q  549 a 549  Q
    |    
T  22294086 a 22294086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 16802063 - 16802126
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||||| ||||||||| | |  |||||||||||||||||| |||||||||    
T  16802063 aagtaatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaattttctattt 16802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 526
Target Start/End: Original strand, 32144802 - 32144845
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattt 526  Q
    |||||||||||||||||| ||||||||||||||||||| |||||    
T  32144802 aagttatgtaattattacatgatcaaaagtaacatcttgtattt 32144845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 41645068 - 41645131
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| |||||||||| |||| ||| ||||||||||||| ||||||||||| |||||    
T  41645068 aagttgtgtaatcattacttgataaaaaataatatcttatattttctagacaaaatttttattt 41645131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 6102870 - 6102927
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||||| | | |||||||||| |||||||| |||||||||    
T  6102870 tgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttctattt 6102927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 2089187 - 2089139
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    |||||| |||| |||||||||||||| ||||||||||| ||||||||||    
T  2089187 tgtaataattatttgatcaaaagtaaaatcttatatttccaagacaaaa 2089139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 2611226 - 2611162
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagaca-aaatttctattt 546  Q
    |||| ||||||||||||||| || |||||| ||| ||||||||| ||||||| ||||||||||||    
T  2611226 aagtaatgtaattattacttaataaaaagtgacagcttatatttccaagacataaatttctattt 2611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Complemental strand, 14044757 - 14044714
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattt 526  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||    
T  14044757 aagttgtgtaataattacttgatcaaaagtaatatcttatattt 14044714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 546
Target Start/End: Complemental strand, 8400238 - 8400180
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||| ||| | |||| |||||  |||||||||||||||||||||| |||||    
T  8400238 atgtaattattatttggtaaaaaataacaaattatattttcaagacaaaatttatattt 8400180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 14863377 - 14863423
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagaca 534  Q
    |||||||||||||||||| |||||| |||  ||||||||||||||||    
T  14863377 atgtaattattacttgataaaaagtgacagtttatattttcaagaca 14863423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 1920810 - 1920761
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||| ||| |||||||||||| |||||||||  |||||||||||||||||    
T  1920810 attatttggtcaaaagtaacaccttatatttctaagacaaaatttctatt 1920761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 545
Target Start/End: Original strand, 42491681 - 42491738
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||||| ||| ||||||||||||  ||||||||  ||||||||| |||||||    
T  42491681 atgtaattattatttgctcaaaagtaacactttatatttcgaagacaaaacttctatt 42491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 546
Target Start/End: Original strand, 1056848 - 1056908
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||| |||| ||||| ||||||||||| |||||||| || ||| | ||||||||||    
T  1056848 ttatgtaatcattatttgattaaaagtaacatattatatttccatgacgatatttctattt 1056908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 39034522 - 39034478
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagac 533  Q
    |||||||||||||| ||||||||| | | ||||||||||||||||    
T  39034522 tgtaattattacttaatcaaaagtcaaaacttatattttcaagac 39034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 3137436 - 3137499
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3137436 aagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctattt 3137499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 3347588 - 3347522
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  3347588 aagttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgta 3347522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 44649015 - 44648949
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  44649015 aagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgta 44648949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 34678281 - 34678221
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  34678281 ttatgtaattattacttgatcaaaagtaacattttacattttcaagacaaattttctattt 34678221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 12201835 - 12201891
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12201835 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 12446263 - 12446319
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12446263 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12446319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 20542429 - 20542489
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  20542429 tgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatttctatttgta 20542489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 548
Target Start/End: Original strand, 25250349 - 25250401
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  25250349 attacttgatcaaaaataacatattatattttcaagacaaaatttctatttgt 25250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 10029206 - 10029264
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  10029206 taatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttatttgta 10029264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 37561566 - 37561513
Alignment:
Q  493 attattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  37561566 attattacttgatcaaaagtaaaatcttatattttcaaaataaaatttctattt 37561513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 18045325 - 18045385
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||||||| || |||||    
T  18045325 tgtaattattacatgaacaaaagtaacatattatattttcaagacaaaatttttagttgta 18045385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 18200752 - 18200692
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||    
T  18200752 tgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgta 18200692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 33621408 - 33621468
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||||||||||||||| || ||||||||| |||||||||||| ||||||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgta 33621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 17720255 - 17720192
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| ||||| ||||||||| ||||||||||||||||||||| || ||||||||||    
T  17720255 aagttgtgtaatcattacatgatcaaaaataacatcttatattttcaagaaaatatttctattt 17720192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 549
Target Start/End: Complemental strand, 18647571 - 18647472
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||||||||||||||||||||| ||||   ||| || || |||||| || | || ||||||| |||||||||||||||| |||| |||||||||||||||    
T  18647571 gttaagcatttaaaacaagtaaatttccatgaaaaaattgtgtaatcatcattttatcaaaa-taacatcttatatttttaagataaaatttctatttgt 18647473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 549
Target Start/End: Complemental strand, 35901527 - 35901427
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||||||||  |||||||||||||||    ||| ||||| || ||| |||| || || ||||||||||||||| |||||||| |||||||||||||||||    
T  35901527 gttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctatttgt 35901428  T
Q  549 a 549  Q
    |    
T  35901427 a 35901427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 11150964 - 11151024
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| |||| ||||||||||||||||||||||||||  ||||||||| || ||||||||    
T  11150964 tgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaattttatttgta 11151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 12981605 - 12981657
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    |||| |||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  12981605 taatcattacttggtcaaatgtaacatcttacattttcaagacaaaatttcta 12981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 31331055 - 31331103
Alignment:
Q  501 ttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  31331055 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgta 31331103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 43917629 - 43917689
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||| ||||| |||||||||  |||||||||||||||||||| || ||||||||    
T  43917629 tgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaattttatttgta 43917689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 547098 - 547166
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacat----cttatattttcaagacaaaatttctatttg 547  Q
    ||||| ||||||||||| |||||||||| ||||||    ||||||||||||||| ||||||||||||||    
T  547098 aagttgtgtaattattatttgatcaaaaataacatttatcttatattttcaagataaaatttctatttg 547166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 547
Target Start/End: Original strand, 1342378 - 1342421
Alignment:
Q  504 atcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  1342378 atcaaaagtaacatcttatatttccaagataaaatttctatttg 1342421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 30076215 - 30076261
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttct 542  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||    
T  30076215 attatttgatcaaaagtaacatcttatatttttaaaacaaaatttct 30076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 40489886 - 40489948
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||||| ||||||| ||||| |||||||| |||||||| |||| |||||||| ||||    
T  40489886 aagttatgtaatcattactttatcaatagtaacattttatatttacaaggcaaaatttttatt 40489948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 41726936 - 41726998
Alignment:
Q  487 tatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||| ||||||| || |||| |||||| |||||||| ||||||||||||| ||||||||    
T  41726936 tatgtaatcattactttataaaaaataacattttatatttccaagacaaaatttttatttgta 41726998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 546
Target Start/End: Original strand, 4989734 - 4989794
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||| |||||||||||||| | | | ||||||||||||||||||| ||| |||||    
T  4989734 ttatgtaattgttacttgatcaaaaatcaaaacttatattttcaagacaaattttttattt 4989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 32881155 - 32881215
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| || ||||||| |||| ||| |||||||||||| |||||||||||| ||||||||    
T  32881155 tgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttatttgta 32881215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 526
Target Start/End: Complemental strand, 8867033 - 8866998
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattt 526  Q
    |||||||||||||||||||| |||||||||||||||    
T  8867033 taattattacttgatcaaaaataacatcttatattt 8866998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Original strand, 600408 - 600462
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    ||||| || ||| ||||||| ||||||||||||||||||||||| |||| |||||    
T  600408 aagttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaa 600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 6270226 - 6270161
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||| || |||||    
T  6270226 aagttgtgtaatcattactttatcaaaa-taacaccttatatttccaagacaaaatttttaattgta 6270161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 44947398 - 44947436
Alignment:
Q  498 tacttgatcaaaagtaacatcttatattttcaagacaaa 536  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  44947398 tactttatcaaaagtaacattttatattttcaagacaaa 44947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 600538 - 600579
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||    
T  600538 attactttatcaaaagtaacatcctatatttccaagacaaaa 600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 12987712 - 12987655
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||| |||| || ||||||||||| | ||||| |||||||||||||||||| ||||    
T  12987712 tgtaatcattatttaatcaaaagtaaaaacttatgttttcaagacaaaatttccattt 12987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 18131233 - 18131290
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||  ||| | | ||||||||||||||||||| |||||||||    
T  18131233 tgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttctattt 18131290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 40607340 - 40607397
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||||| | | |||||||||| |||| ||| |||||||||    
T  40607340 tgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctattt 40607397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 44655305 - 44655252
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttct 542  Q
    ||||||||||||||| ||||  |||||| ||||| ||| |||||||||||||||    
T  44655305 tgtaattattacttggtcaattgtaacaacttatttttccaagacaaaatttct 44655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 535
Target Start/End: Complemental strand, 27507023 - 27506971
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaa 535  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||| ||| ||||    
T  27507023 aagttgtgtaattattattttatcaaaagtaatatcttatatttccaaaacaa 27506971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 33810128 - 33810077
Alignment:
Q  494 ttattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||| ||||||| ||||| |||||||||| |||| |||||||||||||    
T  33810128 ttattacttcatcaaaa-taacaacttatatttttaagataaaatttctattt 33810077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 489 - 548
Target Start/End: Original strand, 19677037 - 19677096
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19677037 tgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 19677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 16979978 - 16980044
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  16979978 aagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaatttctaattgta 16980044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 8896669 - 8896609
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  8896669 tgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgta 8896609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 34993238 - 34993148
Alignment:
Q  453 ttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    |||||||| |||| |||||||||||    ||| ||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||    
T  34993238 ttaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 23142729 - 23142664
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  23142729 aagttgtgtaataattacttgatcaaaaataacatcttatatttccaa-acaaaatttctatttgta 23142664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 502 - 546
Target Start/End: Original strand, 31249568 - 31249612
Alignment:
Q  502 tgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  31249568 tgatcaaaagtaacatcttatattttcaagacaaaatttatattt 31249612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 43118849 - 43118908
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||| || ||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  43118849 gtaattactatttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgta 43118908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 546
Target Start/End: Complemental strand, 18037922 - 18037864
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||| ||||||||||||||||  |||||||||||| ||||||||| |||||    
T  18037922 atgtaattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttattt 18037864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 540
Target Start/End: Complemental strand, 12810224 - 12810167
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    ||||| ||||||||||||||  |||||||||| |||||||||||| ||||||||||||    
T  12810224 aagttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaattt 12810167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 18756912 - 18756965
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||||||||||||  || ||||| ||||||||||||||||||||||    
T  18756912 attacttgatcaaaagtaacacattttatttgcaagacaaaatttctatttgta 18756965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 527
Target Start/End: Complemental strand, 23080699 - 23080658
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatatttt 527  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23080699 ttatgtaatcattacttgatcaaaagtaacatcttatatttt 23080658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 546
Target Start/End: Complemental strand, 31850860 - 31850762
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc----gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||| ||||||||||||||||     ||| || ||||||||| |||| || || ||||||||||||||||||||  |||||||||||| |||||    
T  31850860 gttaagcatctaaaacaagtaagttttttatgaaaaaattatgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttattt 31850762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 18221098 - 18221001
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc----gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||||||||||||| ||| ||||||     ||| ||||| | |||||||||||| |||||| |||||||||||||||| |||| ||||| |||||||    
T  18221098 gttaagcatttaaaataagcaagttttttatgaaaaagttgtataattattacttaatcaaatgtaacatcttatatttccaagtcaaaacttctatt 18221001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 31487781 - 31487725
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||||||| || |||| ||||||||||||||| ||||| ||||||||||||    
T  31487781 tgtaattattacttaataaaaaataacatcttatatttccaagataaaatttctatt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 16685768 - 16685831
Alignment:
Q  483 aagttatgtaattattacttgatcaaa-agtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||  ||||||||| |||||||    
T  16685768 aagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctatt 16685831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 17660004 - 17660067
Alignment:
Q  483 aagttatgtaattattacttgatcaaa-agtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||  ||||||||| |||||||    
T  17660004 aagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctatt 17660067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 37928336 - 37928399
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| ||||||| ||||||| |||||| |||||||||||||| ||||||| |||||    
T  37928336 aagttgtgtaataattactttatcaaaaataacattttatattttcaagataaaatttatattt 37928399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 546
Target Start/End: Complemental strand, 47445425 - 47445370
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||| ||||||||||| | |||||||||||||  ||||||||||||||    
T  47445425 taattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttctattt 47445370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 546
Target Start/End: Original strand, 21515022 - 21515118
Alignment:
Q  453 ttaagcatttaaaacaagtaagtttcgaat---aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| |||||||||| |  |   ||| | ||||||||||| ||||| |||||||||||||| |||||||| |  |||||||||||||    
T  21515022 ttaagcatttaaaataagtaagttttggtttaaaaggtgtgtaattattatttgattaaaagtaacatcttgtattttcatgttaaaatttctattt 21515118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 43626389 - 43626447
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||||||||||||| || |||| |||||||| || ||||||||||||||||| ||||||    
T  43626389 tgtaattattactttataaaaaataacatctaattttttcaagacaaaatttttatttg 43626447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 22555747 - 22555804
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||||| | | | |||||||||| |||| |||||||||||||    
T  22555747 tgtaattattacttgatcaaaaatcaaaacttatattttaaagataaaatttctattt 22555804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 34993146 - 34993109
Alignment:
Q  512 taacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  34993146 taacatcttatattttcaagacaaaatttatatttgta 34993109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 41064369 - 41064315
Alignment:
Q  496 attacttgatcaaaagtaacatctt----atattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||||||||    |||||||||||| |||||||||||||    
T  41064369 attacttgatcaaaagtaacatcttatatatattttcaagataaaatttctattt 41064315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 11740432 - 11740376
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||| |||| ||||||||||||||||  |||||||||||||||||  ||||||||    
T  11740432 tgtaataattagttgatcaaaagtaacagtttatattttcaagacaatttttctatt 11740376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 543
Target Start/End: Original strand, 30028000 - 30028062
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatct--tatattttcaagacaaaatttcta 543  Q
    ||||| ||| || ||||||| ||||||||||||||||  |||||||||| |||||||||||||    
T  30028000 aagttgtgtgatcattactttatcaaaagtaacatcttatatattttcatgacaaaatttcta 30028062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 45907111 - 45907048
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| |||||||||||||||||| |||||| |||  |||||||| ||||||||||  |||||||    
T  45907111 aagtaatgtaattattacttgataaaaagtgacagtttatatttacaagacaaaaaatctattt 45907048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 8746180 - 8746234
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||| |||| |||||||||||||||||  ||||||| ||||||||||||| ||||    
T  8746180 taatcattatttgatcaaaagtaacattctatatttacaagacaaaatttttatt 8746234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 28012890 - 28012928
Alignment:
Q  502 tgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  28012890 tgatcaaaaataacagcttatattttcaagacaaaattt 28012928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 21164673 - 21164730
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||| ||| | |||  ||||||||| ||||||||||||||    
T  21164673 tgtaattattacttcatcaaaaataaaaacttgcattttcaagtcaaaatttctattt 21164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 25530616 - 25530559
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||| ||||||| |||||| ||||||| ||||||||  |||| |||||||||||||    
T  25530616 tgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctattt 25530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 39786523 - 39786466
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||| || ||||||||| | | ||||||||||||||||||  |||||||||    
T  39786523 tgtaattattatttaatcaaaagttaaaacttatattttcaagacaagttttctattt 39786466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 47537461 - 47537514
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaa 536  Q
    ||||| |||||||||||||| ||||||| | | | |||||||||||||||||||    
T  47537461 aagttgtgtaattattacttaatcaaaaatcaaaacttatattttcaagacaaa 47537514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 1309783 - 1309735
Alignment:
Q  501 ttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| ||||||||| | ||||||||| |||| ||||||||||||||||    
T  1309783 ttgataaaaagtaacgtattatatttttaagataaaatttctatttgta 1309735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 49261822 - 49261885
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgtatat 552  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49261822 tgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatttgtatat 49261885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 29032448 - 29032514
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  29032448 aagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctgtttgta 29032514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 6785865 - 6785805
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  6785865 tgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattctatttgta 6785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 44698260 - 44698320
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  44698260 tgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 44698320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 4020140 - 4020200
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  4020140 tgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgta 4020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 546
Target Start/End: Complemental strand, 28709677 - 28709580
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttcga---ataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||| |||| ||||||||||| |   | ||||| | |||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||    
T  28709677 gttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttctattt 28709580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 635782 - 635716
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| |||| || ||||||||||||||||||| | ||||||||||||||||||||||||    
T  635782 aagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttctatttgta 635716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 3215088 - 3215142
Alignment:
Q  494 ttattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  3215088 ttattacttgatcaaaagcaacatcttatattttcaagataaagtttctatttgt 3215142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 55446768 - 55446834
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| || |||||||||||||||||||| ||||||||||||| ||||||||    
T  55446768 aagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgta 55446834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 547
Target Start/End: Original strand, 50958846 - 50958960
Alignment:
Q  437 agaatgataaccattg-ttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaaga 532  Q
    |||||| |||||| || ||||||||  |||||||||||||||    ||| || || |||||| ||| ||||||||||| |||||| |||||||| |||||    
T  50958846 agaatgttaaccaatgcttaagcatccaaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaaga 50958945  T
Q  533 caaaatttctatttg 547  Q
    |||||||||||||||    
T  50958946 caaaatttctatttg 50958960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 42437791 - 42437727
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||| |||||  ||||||||||||||||||||| || ||||| ||||||||||||||||    
T  42437791 aagttatgtaatcattac--gatcaaaagtaacatcttataattccaagataaaatttctatttgta 42437727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 48338849 - 48338912
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| ||||||| ||||||| ||||||||||||||| ||||| |||||||||||||    
T  48338849 aagttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaatttctattt 48338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 8326179 - 8326237
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||||| ||| |||||||||||||||||| ||||||||| || ||||||||||||||||    
T  8326179 tgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctatttg 8326237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 34145974 - 34145920
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  34145974 taattattacttgatcaaaaataacatcttatatttccaacacaaaatttatatt 34145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 1711993 - 1711944
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  1711993 taattattacttagtcaaatgtaacatcttatattttcaagacaaaattt 1711944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 11676800 - 11676747
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  11676800 attatttgatcaaaagtaacgtcttttattttcaagacaaaatttatatttgta 11676747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 54801401 - 54801341
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||| ||| ||| ||||    
T  54801401 tgtaattattactttagcaaaagtaacatcttatattttcaagataaattttttatatgta 54801341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 12109694 - 12109752
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||  | |||||||| ||||||||||||||| ||| ||||||||||||||    
T  12109694 taattattacttagttaaaagtaatatcttatattttcaaaacataatttctatttgta 12109752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 548
Target Start/End: Original strand, 48138107 - 48138160
Alignment:
Q  496 attacttgatcaaaagtaacatcttatattttcaagac-aaaatttctatttgt 548  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||||||||||||    
T  48138107 attacttaatcaaaaataacatattatattttcaagacaaaaatttctatttgt 48138160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 549
Target Start/End: Complemental strand, 25958122 - 25958070
Alignment:
Q  497 ttacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| |||||||||||||||||||||||| |||||||| ||| ||| ||||    
T  25958122 ttactttatcaaaagtaacatcttatatttttaagacaaattttttatatgta 25958070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Complemental strand, 26613142 - 26613099
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattt 526  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||    
T  26613142 aagttatgtaattattacttgattaaaaataacattttatattt 26613099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 5388372 - 5388437
Alignment:
Q  96 taattatgaggacctaa--tccaatctagatattgagggaggggcagtgctcgtgatcagcttcta 159  Q
    |||||||||| ||||||  ||||||||||| || |||  |||||||||||||| ||||||||||||    
T  5388372 taattatgagaacctaagatccaatctagacatcgagaaaggggcagtgctcgcgatcagcttcta 5388437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 545
Target Start/End: Original strand, 27639498 - 27639594
Alignment:
Q  452 gttaagcatttaaaacaagtaagttt---cgaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||||||| ||||||||| ||||||   | ||||||| ||||||  |||| ||  |||||||||| |||||||||||  |||| ||||||||||||    
T  27639498 gttaagcatctaaaacaagaaagttttcacaaataagtgatgtaacaattatttagtcaaaagtaatatcttatatttcgaagataaaatttctatt 27639594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Original strand, 25319521 - 25319562
Alignment:
Q  505 tcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||| |||||||||||| ||||||||| |||||    
T  25319521 tcaaaagtaacattttatattttcaatacaaaatttttattt 25319562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 552
Target Start/End: Complemental strand, 33148244 - 33148139
Alignment:
Q  450 ttgttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| |||| |||||||||||||||    ||| || || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  33148244 ttgttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaattt 33148145  T
Q  547 gtatat 552  Q
    ||||||    
T  33148144 gtatat 33148139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 10226539 - 10226473
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  10226539 aagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgta 10226473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 8001824 - 8001761
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8001824 aagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctattt 8001761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 32187089 - 32187152
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  32187089 aagttgtgcaattattatctgatcaaaagtaacatcttatattttcaagacaaaatttctattt 32187152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 26829528 - 26829594
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  26829528 aagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgta 26829594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 11449068 - 11449162
Alignment:
Q  458 catttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||| ||||||||||    ||| |||||||||||||||||| ||||||||| |||||| ||||||||| |||||||| ||| ||||||||    
T  11449068 catttaaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgta 11449162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 13969170 - 13969110
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  13969170 tgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttctatttgta 13969110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 549
Target Start/End: Complemental strand, 46295984 - 46295882
Alignment:
Q  450 ttgttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||  ||||||| |||||||    ||| ||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  46295984 ttgttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatttttattt 46295885  T
Q  547 gta 549  Q
    |||    
T  46295884 gta 46295882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 549
Target Start/End: Complemental strand, 17169381 - 17169281
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||||||| |||||||| |||||||    ||| ||||| | |||| ||||||| ||||||| |||||||||||||||||||||||| |||| |||||||    
T  17169381 gttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattttcaagacaatatttttatttgt 17169282  T
Q  549 a 549  Q
    |    
T  17169281 a 17169281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 5069532 - 5069598
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||| ||||||| ||||||| ||| ||||||||||| ||||||||||||| ||| ||||    
T  5069532 aagttatgtaatcattactttatcaaaaataatatcttatatttacaagacaaaatttttatatgta 5069598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 37494212 - 37494265
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttc 541  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  37494212 atgtaatcattactttatcaaaaataacatcttatattttcaagataaaatttc 37494265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 27688521 - 27688581
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||||||  |||||||    
T  27688521 tgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattttaatttgta 27688581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 552
Target Start/End: Original strand, 3529434 - 3529476
Alignment:
Q  510 agtaacatcttatattttcaagacaaaatttctatttgtatat 552  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  3529434 agtaacatcttatattttcaagataaaatttctatttatatat 3529476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 546
Target Start/End: Original strand, 5069761 - 5069802
Alignment:
Q  505 tcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  5069761 tcaaaagtaacaccttatatttccaagacaaaatttctattt 5069802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 537
Target Start/End: Complemental strand, 15398316 - 15398272
Alignment:
Q  493 attattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  15398316 attattacttggtcaaatgtaacatcttacattttcaagacaaaa 15398272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 40699292 - 40699340
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    ||||||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  40699292 tgtaattattactcgatcaaaagtaaaatcttatgtttccaagacaaaa 40699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 547
Target Start/End: Original strand, 30109268 - 30109327
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    ||||||| |||  ||||| |||| |||||| |||||||||||| ||||||||||||||||    
T  30109268 atgtaatcattgtttgataaaaaataacatattatattttcaaaacaaaatttctatttg 30109327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 31160762 - 31160825
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||||| ||||||||| | |  ||||||||| |||||||| |||||||||    
T  31160762 aagtgatgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctattt 31160825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 534
Target Start/End: Complemental strand, 40391295 - 40391244
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagaca 534  Q
    |||| |||||||||||||||||| |||||| |||  ||||||||||||||||    
T  40391295 aagtaatgtaattattacttgataaaaagtgacagtttatattttcaagaca 40391244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 48282968 - 48282905
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||| |||| |||||| |||  |||||||||||||||| || ||||||||    
T  48282968 aagtaatgtaattattacctgataaaaagtgacagattatattttcaagacagaaattctattt 48282905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 543
Target Start/End: Original strand, 8279794 - 8279832
Alignment:
Q  505 tcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  8279794 tcaaatgtaacatcttatattttcaagacaaaacttcta 8279832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 26855904 - 26855850
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    |||| |||||||||||||||||| |||||| |||  |||||||| ||||||||||    
T  26855904 aagtaatgtaattattacttgataaaaagtgacagattatatttccaagacaaaa 26855850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 31262847 - 31262785
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||| |||||||||||| ||| |||||| |||||  |||||||| ||| ||||||||||||||    
T  31262847 aagtgatgtaattattatttggtcaaaaataacactttatatttacaaaacaaaatttctatt 31262785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 549
Target Start/End: Original strand, 39993446 - 39993480
Alignment:
Q  515 catcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||||||||||||||||| ||||||||    
T  39993446 catcttatattttcaagacaaaatttttatttgta 39993480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 48579932 - 48579994
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||| |||||| |||| ||||| |||| | |||||||||||||  |||||||||||||||||    
T  48579932 aagttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctatt 48579994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 546
Target Start/End: Complemental strand, 50015835 - 50015789
Alignment:
Q  500 cttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||| ||| |||||||| ||||||||||| ||||||    
T  50015835 cttgatcaaaagtaatatcatatatttttaagacaaaattcctattt 50015789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 27540 - 27597
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||||| | | |||||||||| |||||||| ||| |||||    
T  27540 tgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttattt 27597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 39238873 - 39238930
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||| |||||||||||||| |||||| |||| ||||| |||| ||||||| |||||    
T  39238873 tgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttattt 39238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 52762369 - 52762316
Alignment:
Q  493 attattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||| | |  |||||||| ||||||||||||| |||||    
T  52762369 attattacttgatcaaaagttaaaatttatatttacaagacaaaatttttattt 52762316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 17644830 - 17644782
Alignment:
Q  501 ttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||| ||||||||||| |||| |||| |||||||||||| |||||||||    
T  17644830 ttgagcaaaagtaacaacttaaatttccaagacaaaattactatttgta 17644782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 35542765 - 35542801
Alignment:
Q  504 atcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    |||||||||||||||||| |||| |||||||||||||    
T  35542765 atcaaaagtaacatcttacatttacaagacaaaattt 35542801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 546
Target Start/End: Complemental strand, 37597202 - 37597146
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| ||||||||||||||| ||| |||||| |||| |||||||| |||| |||||    
T  37597202 gtaatcattacttgatcaaaaataaaatcttacatttccaagacaatatttttattt 37597146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 46836243 - 46836299
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||||||||||| |||| |||| | | | ||||||||||||||||||||| ||||||    
T  46836243 taattattacttaatcataagtcaaaacctatattttcaagacaaaatttttatttg 46836299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 47496864 - 47496915
Alignment:
Q  494 ttattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||| ||||||| ||||| |||||||||| |||| |||||||||||||    
T  47496864 ttattacttcatcaaaa-taacaacttatatttttaagataaaatttctattt 47496915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 535
Target Start/End: Original strand, 48502602 - 48502654
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaa 535  Q
    ||||| |||||| |||| ||  |||||||||||| ||||||||||||||||||    
T  48502602 aagttgtgtaataattagttagtcaaaagtaacagcttatattttcaagacaa 48502654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 49731231 - 49731179
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    ||||||||| ||| ||||| ||||||||||| || |||||||||||| |||||    
T  49731231 taattattatttggtcaaatgtaacatcttacatcttcaagacaaaacttcta 49731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 52429664 - 52429727
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttc-aagacaaaatttctattt 546  Q
    ||||| |||||| |||||| |||||| |||||||||||| |||||| ||||||||||||| ||||    
T  52429664 aagttgtgtaatcattactagatcaagagtaacatctta-attttctaagacaaaatttcaattt 52429727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 13717214 - 13717282
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgtatat 552  Q
    |||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||    
T  13717214 aagttatgtaattattactt-attaaaaataacattttatattttcaagacaaaatttctatttgtatat 13717282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 4978823 - 4978767
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4978823 tgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 4996731 - 4996675
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4996731 tgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4996675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 32909480 - 32909413
Alignment:
Q  485 gttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgtatat 552  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  32909480 gttatgtaataattactttatcaaaagtaatatcttatatttccaagacaaaatttatatttgtatat 32909413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 18717886 - 18717952
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  18717886 aagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgta 18717952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 23453381 - 23453447
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23453381 aagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgta 23453447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 38024257 - 38024192
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||| |||| ||||||||||||||||    
T  38024257 aagttatgtaattattatttgatcaaa-gtaatatcttatatttttaagataaaatttctatttgta 38024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 40574220 - 40574154
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| |||||||||||||  ||||||||| |||| |||||||| ||||||||||||||||||||||    
T  40574220 aagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttctatttgta 40574154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 3689694 - 3689630
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||| |||||  ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  3689694 aagttatgtaatcattac--gatcaaaagtaacatcttatatttcaaagataaaatttctatttgta 3689630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 8580556 - 8580611
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||    
T  8580556 taattattacttaatcaaaagtaacatcttatatttccaagacaacaattctattt 8580611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 40346744 - 40346810
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| || ||| |||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  40346744 aagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgta 40346810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 504 - 549
Target Start/End: Complemental strand, 1004831 - 1004786
Alignment:
Q  504 atcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  1004831 atcaaaagtaatattttatattttcaagacaaaatttctatttgta 1004786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 1870565 - 1870508
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| ||||||||| | | ||||||||||||||||||| |||||||||    
T  1870565 tgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattttctattt 1870508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 545
Target Start/End: Original strand, 7141155 - 7141212
Alignment:
Q  488 atgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||||| |||| ||| |||||||||||| ||||| ||||||||||||||||||||||    
T  7141155 atgtaatcattatttggtcaaaagtaacaccttatgttttcaagacaaaatttctatt 7141212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 13738466 - 13738409
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||| ||||||| |||| |||||||||||||||||||||| ||||||||| |||||    
T  13738466 tgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttattt 13738409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 4186414 - 4186474
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||| ||||||| ||||||| |||||||||||| | ||||||| ||||||||    
T  4186414 tgtaattattactagatcaaatgtaacattttatattttcaaaataaaatttttatttgta 4186474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 6315929 - 6315970
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaa 530  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  6315929 tgtaatcattacttgatcaaaaataacatcttatattttcaa 6315970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 544
Target Start/End: Complemental strand, 28331365 - 28331270
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctat 544  Q
    |||||||||| |||| ||||||||||    |||  |||| |||||| ||||||||||||||| ||| || |||||||| |||||||||| ||||||    
T  28331365 gttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaacttctat 28331270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 43131830 - 43131774
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||||||||||||||||||||||  | |||| ||||| |||||||||||| ||||    
T  43131830 tgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttatt 43131774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 4557615 - 4557674
Alignment:
Q  490 gtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||| ||||||  ||||||| |||| |||||||||| ||||| ||||||||||||||||    
T  4557615 gtaataattactcaatcaaaaataacttcttatatttccaagataaaatttctatttgta 4557674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 5444569 - 5444506
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||| ||||||||| || |||||| | | ||||||||||||||||||||||| |||||    
T  5444569 aagttgtgtatttattacttaattaaaagtcaaaacttatattttcaagacaaaatttttattt 5444506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 549
Target Start/End: Complemental strand, 7932995 - 7932902
Alignment:
Q  459 atttaaaacaagtaagttt---cgaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||| ||||||||||   |||| ||||| || ||| ||||||| ||| ||||||| |||||| ||||  || ||||||||||||||||||    
T  7932995 atttaaaataagtaagtttttacgaaaaagttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatttgta 7932902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 14953068 - 14953123
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| |||||| |||||||| |||||| ||||||||| |||||||||||| |||||    
T  14953068 taatcattactcgatcaaaaataacattttatatttttaagacaaaatttttattt 14953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 544
Target Start/End: Complemental strand, 19050062 - 19050007
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctat 544  Q
    |||||||||||||||||||||| ||| || ||||||||  | ||||||||||||||    
T  19050062 tgtaattattacttgatcaaaaataatattttatatttctatgacaaaatttctat 19050007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 6462660 - 6462602
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||| || ||||||||||| || ||||||||  |||||| ||||||||||||||    
T  6462660 taattattattttatcaaaagtaatattttatatttataagacagaatttctatttgta 6462602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 27896499 - 27896561
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    ||||| |||||||||||||  ||||||||||||| |||||||||  || ||||| ||||||||    
T  27896499 aagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 27896561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 549
Target Start/End: Original strand, 41436327 - 41436427
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    |||||||||  |||||||||||||||    ||| ||||| |||||| |||| || ||||||| |||||||||||| ||  |||| ||||||||||| |||    
T  41436327 gttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaatttctatatgt 41436426  T
Q  549 a 549  Q
    |    
T  41436427 a 41436427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 481456 - 481501
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagaca 534  Q
    ||||||||||||||||||||| |||| | ||||| |||||||||||    
T  481456 tgtaattattacttgatcaaacgtaataacttatgttttcaagaca 481501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 8312471 - 8312422
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    ||||||||| |||||  ||||||||| ||||||||||||| |||||||||    
T  8312471 taattattatttgattgaaagtaacaacttatattttcaaaacaaaattt 8312422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 13835878 - 13835935
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||| || |||||| | | ||||||||||||||||| | |||||||||    
T  13835878 tgtaattattacttaataaaaagtcaaaacttatattttcaagacagattttctattt 13835935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 33635549 - 33635602
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaa 536  Q
    |||| ||||||||||||||| ||||||||| | |  ||||||||||||||||||    
T  33635549 aagtgatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaa 33635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 546
Target Start/End: Original strand, 44032159 - 44032219
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||| |||| ||| | ||||  |||||||||| |||||| |||||    
T  44032159 ttatgtaattattacttgataaaaaataataacttaggttttcaagacgaaatttttattt 44032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 549
Target Start/End: Original strand, 32134048 - 32134148
Alignment:
Q  452 gttaagcatttaaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||||||| ||||| ||||||||||    ||| ||||| |||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  32134048 gttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaacaaaatttctatttgt 32134147  T
Q  549 a 549  Q
    |    
T  32134148 a 32134148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 546
Target Start/End: Complemental strand, 5611229 - 5611143
Alignment:
Q  463 aaaacaagtaagtttc---gaataagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||    ||||||||| | ||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||    
T  5611229 aaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctattt 5611143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 2613420 - 2613366
Alignment:
Q  492 aattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  2613420 aattattacttgatcaaaagtagcaacttatatttttaagacaaaatttctattt 2613366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 17454044 - 17453993
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaattt 540  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  17454044 tgtaattattacgtgatcaaaagtaacatcttatattttcaaaataaaattt 17453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 18493279 - 18493334
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaat 538  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||    
T  18493279 aagttttgtaataattacttgatcaaaagtaacattttatattttcaagataaaat 18493334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 1397066 - 1397131
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaac-atcttatattttcaagacaaaatttctatttgtat 550  Q
    |||||||||||||| ||||||||||||||| | |||||||||| ||||||| |||| |||||||||    
T  1397066 ttatgtaattattatttgatcaaaagtaacaaacttatattttaaagacaatatttatatttgtat 1397131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 542
Target Start/End: Original strand, 10008235 - 10008288
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttct 542  Q
    |||||||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  10008235 tgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct 10008288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 17345919 - 17345854
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgt 548  Q
    ||||||||||||   |||||||||||||||||||| ||||||||| || ||||||||| |||||||    
T  17345919 aagttatgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaatttttatttgt 17345854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 2911536 - 2911484
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttcta 543  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  2911536 taatcattacttgatcaaatgtaacatcttacattttcaagacaaaacttcta 2911484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 2398044 - 2398107
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||||| ||||||||| | | ||||||||||||||| ||| |||||||||    
T  2398044 aagtgatgtaattattacttaatcaaaagtcaaaacttatattttcaagataaattttctattt 2398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 227392 - 227434
Alignment:
Q  504 atcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  227392 atcaaaagtaacatcttatattttcaaaaaaaaatttctattt 227434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 17835045 - 17834987
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||||||||| ||||||||||| |||||||||||  ||||||| ||| |||||||||    
T  17835045 taattattacttaatcaaaagtaatatcttatatttcaaagacaatattgctatttgta 17834987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 547
Target Start/End: Complemental strand, 33121388 - 33121324
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    ||||| |||||| |||  ||||| |||| |||||||||||||||||||||||||| || ||||||    
T  33121388 aagttgtgtaatcattgtttgataaaaaataacatcttatattttcaagacaaaaattttatttg 33121324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 6770870 - 6770933
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||||||||||||| || ||||||||| | |  |||||||||||||| ||| |||||||||    
T  6770870 aagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagataaattttctattt 6770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 19320382 - 19320294
Alignment:
Q  453 ttaagcatttaaaacaagtaagtttcgaataa----gttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    |||||||||||||||||||||||||  |  ||    ||| ||||||  |||||| |||||||||||||| |||||||| ||||||||||    
T  19320382 ttaagcatttaaaacaagtaagttttcataaaaagagttgtgtaatcgttactttatcaaaagtaacattttatatttgcaagacaaaa 19320294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 521
Target Start/End: Complemental strand, 8636821 - 8636783
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatctta 521  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  8636821 aagttatgtaatcattactttatcaaaagtaacatctta 8636783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 30929540 - 30929586
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaa 537  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  30929540 taattattatttgatcaaatgtaacatcttaaattttcaaggcaaaa 30929586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 2470395 - 2470451
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||| ||||||||| ||||| ||| |||||||||||  |||||||| ||||||||||    
T  2470395 taatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttg 2470451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 15429 - 15380
Alignment:
Q  497 ttacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15429 ttacttggtcaaaagtaacatcttatattttcaagacaaaaattctattt 15380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 497 - 549
Target Start/End: Original strand, 120719 - 120771
Alignment:
Q  497 ttacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  120719 ttactttaccaaaagtgacatcttatattttcaagacaaaatttctatttgta 120771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 545
Target Start/End: Original strand, 7401 - 7456
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatt 545  Q
    |||||| |||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  7401 tgtaatcattatttgatcaaaagtaatatcttatattttcaagac-aaatttctatt 7456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 546
Target Start/End: Original strand, 3376 - 3424
Alignment:
Q  498 tacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  3376 tactttatcaaaagtaacattttatattttcaagacaaaatttttattt 3424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 30058 - 29998
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||| || || |||||||||||||||||||||||| | ||| ||||||||||||    
T  30058 tgtaattattatttaattaaaagtaacatcttatattttcaaaataaagtttctatttgta 29998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 36576 - 36632
Alignment:
Q  491 taattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttg 547  Q
    |||| |||| || ||||||||||||||||||||||||||| ||||||||| ||||||    
T  36576 taatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttg 36632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 51685 - 51748
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  ||||||||| || ||||||||    
T  51685 ttatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgta 51748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 1182 - 1119
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    |||| ||||||||||||||| || |||||| |||  |||||||||||||| |||| ||||||||    
T  1182 aagtaatgtaattattacttaataaaaagtgacagtttatattttcaagaaaaaaattctattt 1119  T

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Target: scaffold0299 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 18093 - 18030
Alignment:
Q  483 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctattt 546  Q
    ||||| |||||||||||||| ||||||||| | | |||||||||| |||| ||| |||||||||    
T  18093 aagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctattt 18030  T

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Target: scaffold0957 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 549
Target Start/End: Complemental strand, 1964 - 1925
Alignment:
Q  509 aagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  1964 aagtaacatctta-atttacaagacaaaatttctatttgta 1925  T

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Target: scaffold0117 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 16904 - 16856
Alignment:
Q  486 ttatgtaattattacttgatcaaaagtaacatcttatattttcaagaca 534  Q
    |||| ||||||||||||||| |||||| |||  ||||||||||||||||    
T  16904 ttatataattattacttgataaaaagtgacagtttatattttcaagaca 16856  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 28920 - 28860
Alignment:
Q  489 tgtaattattacttgatcaaaagtaacatcttatattttcaagacaaaatttctatttgta 549  Q
    |||||| ||||||| |||||||  ||||| |||||| |  |||||||||||||||||||||    
T  28920 tgtaatcattactttatcaaaaagaacatattatatctataagacaaaatttctatttgta 28860  T

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