View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_high_7 (Length: 558)
Name: NF17441_high_7
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Complemental strand, 9465507 - 9465057
Alignment:
| Q |
12 |
tattctatttagtatatactgtttagcggatcaaacacacctaaacattttagaattgaatattttattgagtttatgttcataatattagtgctttcat |
111 |
Q |
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| T |
9465507 |
tattttatctagtatatactgtttagcggatcaaacacacctaaacattttagaattgaatattttattgagtttatgttcataatattagtgctttcat |
9465408 |
T |
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| Q |
112 |
tnnnnnnnncggacttttcaagaaatgagtatgcacaaaggattgtcaccgacaaagtagttaagtgtacatttagtgaagtgtggtggtagaatataga |
211 |
Q |
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| T |
9465407 |
taaaaaaaacggacttttcaagaaatgagtatgcacaaaggattgtcaccgacaaagtagttaagtgtacatttagtgaagtgtggtggtagaatataga |
9465308 |
T |
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| Q |
212 |
tggcaatgttacttaatggatatgaaaatcttcctaattgaagtttgcctaacataaagtccacaaagttgaaagcatatgttgcttgcatgctctttta |
311 |
Q |
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| T |
9465307 |
tggcaatgttacttaatggatataaaaatcttcctaattgaagtttgcctaacataaagtccacaaagttgaaagcatatgttgcttgcatgctctttta |
9465208 |
T |
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| Q |
312 |
tcattttatacctcgaagtaagaaatcatcaagtttggagaaaatgatgaaataagtatgctatttgttggaaagttcatatgaatgcaagaacatcatt |
411 |
Q |
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| T |
9465207 |
tcattttatacctcgaagtaagaaatcatcaagtttggagaaaatgatgaaataagtatgctatttgttggaaagttcatatgaatgcaagaacatcatt |
9465108 |
T |
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| Q |
412 |
agcatgtcaatgattcaggatcatcaaaagatcgacatactatattttcat |
462 |
Q |
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| T |
9465107 |
aacatgtcaatgattcaggattattaaaagatcgacatcctatattttcat |
9465057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 480 - 542
Target Start/End: Complemental strand, 9464988 - 9464926
Alignment:
| Q |
480 |
ttgttactctttacattctgaactcttcaacgaatagtgttagaggtccgttttgtatatttt |
542 |
Q |
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| T |
9464988 |
ttgttactctttatattctgaactcttcaacaaataatgttagaggtccgttttgtatatttt |
9464926 |
T |
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