View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_1 (Length: 713)
Name: NF17441_low_1
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 704
Target Start/End: Original strand, 41875050 - 41875734
Alignment:
| Q |
18 |
gatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgacatatcaagaagac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875050 |
gatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgacatatcaagaagaa |
41875149 |
T |
|
| Q |
118 |
aactatattttaagtgtgaaaattttcaaaagaggtgagagatgaattttttatgaattcattaatatttggatttttcctcactaatttttt-gagtta |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41875150 |
aactatattttaagtgtgaaaattttcaaaagaggtgagagatgaattttttatgaattcattaatatttggatttttccccactaatttttttgagtta |
41875249 |
T |
|
| Q |
217 |
tctggtttactctatctactgttatactcttgnnnnnnnnnnnnnnnnngaagaaatgactatataatattttcttctgtattctatgtcgttagtggag |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41875250 |
tctggtttactctatctactgttatactcttgaaaaaaataataaa---gaagaaatgactatataatattttcttctgtattctatgtcgttagcggag |
41875346 |
T |
|
| Q |
317 |
cttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttatgcaataa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875347 |
cttttaaatttagaggtgcctgcaatgctgttttctctctcacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttatgcaataa |
41875446 |
T |
|
| Q |
417 |
ttacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtggaaatcatgctgctgcattggctttggc |
516 |
Q |
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| T |
41875447 |
atacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtggaaatcatgctgctgcattggctttggc |
41875546 |
T |
|
| Q |
517 |
agcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875547 |
agcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttt |
41875646 |
T |
|
| Q |
617 |
tctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctgatgatg |
704 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41875647 |
tctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatg |
41875734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 310 - 689
Target Start/End: Complemental strand, 40868891 - 40868504
Alignment:
| Q |
310 |
agtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttat |
409 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| | | |
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| T |
40868891 |
agtggagcttttaaatttagaggtgcatgcaatgctgttttctctctcaatgatgaagatgcgtctaaaggggttataacacacagcaggtttgttatgt |
40868792 |
T |
|
| Q |
410 |
gcaata---attacataag----ttattttttcaaatctgattcagttaatttattct-cttctaatgttgttctctgaaatcagtggaaatcatgctgc |
501 |
Q |
| |
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||| || ||| || || |||||||||||||||| ||| || | |||||| | ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
40868791 |
gcagtagtaattccagaaactgattattttttcaaatcttattttgtaattttattgttcttctgacgttgttctctgaaatcagtggaaaccatgctgc |
40868692 |
T |
|
| Q |
502 |
tgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgat |
601 |
Q |
| |
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|||||||||| |||||||||||||| |||| |||||||||||| |||||| ||| ||||||| ||||| |||||| |||||||||| ||| |||||| | |
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| T |
40868691 |
tgcattggctctggcagcaaaactacgggggatccctgcatacattgttattcctaaaaatgcgccaacatgtaaaattgagaatgtgaagcggtatggt |
40868592 |
T |
|
| Q |
602 |
ggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttatac |
689 |
Q |
| |
|
||| |||||| || ||||||||||| || || |||||||| ||| |||||||| | || | |||||||| |||||||| ||||||| |
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| T |
40868591 |
ggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatac |
40868504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 40869119 - 40868981
Alignment:
| Q |
18 |
gatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgacatatcaagaagac |
117 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||||||||| | || || |||||||||||||||| ||||||||||| ||||||| |||| | |
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| T |
40869119 |
gatatttcatccataaatgaagcacatgccagaataaaatcattgattcttaagaccccagttctctcctccacctctctgaatgccatatcaggaaggc |
40869020 |
T |
|
| Q |
118 |
aactatattttaagtgtgaaaattttcaaaagaggtgag |
156 |
Q |
| |
|
| || || ||||||||||||| || |||||| |||||| |
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| T |
40869019 |
agctttactttaagtgtgaaagcttccaaaaggggtgag |
40868981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 24818597 - 24818474
Alignment:
| Q |
33 |
aaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgacatatcaagaagacaactatattttaagt |
132 |
Q |
| |
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||||||||| | | ||| |||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||| |
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| T |
24818597 |
aaagaagcatacgataggattaaatcattggtccatagaactccagttctctcctccacctctctagatgacatatctggaagaaaactatattttaagt |
24818498 |
T |
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| Q |
133 |
gtgaaaattttcaaaagaggtgag |
156 |
Q |
| |
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|||||||||| ||||| ||||||| |
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| T |
24818497 |
gtgaaaatttccaaaaaaggtgag |
24818474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 24818392 - 24818262
Alignment:
| Q |
277 |
tatataatattttcttctgtattctatgtcg-ttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttct |
375 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||| ||||||||||||||||| ||||| ||||| |||||| ||||||| || |||||||| |||||| |
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| T |
24818392 |
tatataatatttccttttgtattctatgaccattagcggagcttttaaatttaggggtgcatgcaacgctgttctctctctgaccgatgaagaggcttct |
24818293 |
T |
|
| Q |
376 |
aaaggtgttataacacacagcaggtttgttt |
406 |
Q |
| |
|
||||| || | ||||||||||||| ||||| |
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| T |
24818292 |
aaaggagtaactacacacagcaggtgtgttt |
24818262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 696
Target Start/End: Complemental strand, 24818185 - 24817970
Alignment:
| Q |
481 |
aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt |
580 |
Q |
| |
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||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||| |||| ||| |||| || ||| ||||||| || |
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| T |
24818185 |
aatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt |
24818086 |
T |
|
| Q |
581 |
gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgcta |
680 |
Q |
| |
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|| ||| |||||||||| ||||| || ||||| || |||||| || || | ||||||||| |||||| ||| | | || | |||||||| |||||| |
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| T |
24818085 |
gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgcta |
24817986 |
T |
|
| Q |
681 |
tatttataccttcttc |
696 |
Q |
| |
|
| | |||||||||||| |
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|
| T |
24817985 |
tctatataccttcttc |
24817970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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