View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_10 (Length: 507)
Name: NF17441_low_10
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 4686839 - 4686371
Alignment:
| Q |
19 |
atttcgaatcaagaggatgatgataacttgaagtggtagcttcactccaattagtgctagaaccttgtatcttattatgatcaatattcaagtcttcttc |
118 |
Q |
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| T |
4686839 |
attttgaatcaagaggatgatgataagttgaagtggtagcttcactccaattagtgctagaaccttgtatcttattatgatcaatattcaagtcttcttc |
4686740 |
T |
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| Q |
119 |
accataaaagaattccaacccatcaaatcttggtggataattggtagataccatatgatcaatttccggaatgaacttgccttgttcttcttgcaccgag |
218 |
Q |
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| T |
4686739 |
accataaaagaattccaacccatcaaatcttggtggataattggtagataccatatgatcaatttctggaatgaacttgccttgttcttcttgcaccgag |
4686640 |
T |
|
| Q |
219 |
tcaaagtattgaccatttattgcaaattgtacttggttatggttgttatcattggaagaattaacacaagtagaagatcccacatgatgttcttgatcat |
318 |
Q |
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| T |
4686639 |
tcaaagtattgaccatttattgcaaattgtacttggttatggttgttatcattggaagaattaacacaagtagaagatcccacatgatgttcttgatcat |
4686540 |
T |
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| Q |
319 |
aaacttgttcatgagttgaagaagtagcatttgaaaattgaagattcaaagcatcaaaagtagtattaggatgataatcacctgaaaatcttcctccaag |
418 |
Q |
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| T |
4686539 |
aaacttgttcatgagttgaagaagtagcatttgaaaattgaagattcaaagcatcaaaagtagtattaggatgataatcacctgaaaatcttcctccaag |
4686440 |
T |
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| Q |
419 |
cttcataagaagttttctaatagaatcttgatcattgaagccttgttggtttgtgtatgacaacattga |
487 |
Q |
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| T |
4686439 |
cttcataagaagttttctaatagaatcttgatcattgaagccttgttggtttgtgtatgacaacattga |
4686371 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 47846314 - 47846366
Alignment:
| Q |
405 |
aatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaa |
457 |
Q |
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| T |
47846314 |
aatctcccaccaagcttgattagaaattttctaatagaatcttgatcgttgaa |
47846366 |
T |
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