View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17441_low_13 (Length: 460)
Name: NF17441_low_13
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 32252900 - 32253335
Alignment:
| Q |
18 |
actgtcctcttcttacattgtcgtcgaacactgcgttaccttggcagttcactatcctaactcttccttgtcctcttatcacgtacaataggctgttggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32252900 |
actgtcctcttcttacattgtcgtcgaacactgcgttaccttggcagttcactatcctaactcttccttgtcctcttatcacgtacaataggctgttggc |
32252999 |
T |
|
| Q |
118 |
gttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttcattaatttgacttatcacatcatagaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32253000 |
gttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttcattaatttaacttatcacatcatagaaat |
32253099 |
T |
|
| Q |
218 |
gtacacattggttaaata-ttagttttatgcataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgt |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253100 |
gtacacattggttaaataattagttttatgcataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgt |
32253199 |
T |
|
| Q |
317 |
taacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253200 |
taacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaa |
32253299 |
T |
|
| Q |
417 |
accattctgtccacgtgttctttgtttctctctgct |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32253300 |
accattctgtccacgtgttctttgtttctctctgct |
32253335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 247 - 452
Target Start/End: Original strand, 32242558 - 32242763
Alignment:
| Q |
247 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32242558 |
cataccctatagaggagaacatattcagcactgaggcgtaaattgcggaggattgggagagttaaactgttaacatcactgatgcgacctgcacgtgggt |
32242657 |
T |
|
| Q |
347 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32242658 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgtcctttgtttctc |
32242757 |
T |
|
| Q |
447 |
tctgct |
452 |
Q |
| |
|
|||||| |
|
|
| T |
32242758 |
tctgct |
32242763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 247 - 422
Target Start/End: Original strand, 32248386 - 32248561
Alignment:
| Q |
247 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
346 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
32248386 |
cataccctgtagaggagaacatattcagcactgaggcgtaaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggt |
32248485 |
T |
|
| Q |
347 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccatt |
422 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
32248486 |
tgtagagatctgcacgtgcagggcgagcgatgttctccacaatccttaaactgcagatagtttcttccaaaccatt |
32248561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 32242320 - 32242455
Alignment:
| Q |
18 |
actgtcctcttcttacattgtcgtcgaacactgcgttaccttggcagttcactatcctaactcttccttgtcctcttatcacgtacaataggctgttggc |
117 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
32242320 |
actgtccccttcttacattgtcatcaaacactgcgttaccttggcagttcactatcctaactcttccttgtcctctaatcacgtacaaaaggctgttggc |
32242419 |
T |
|
| Q |
118 |
gttgatgttccagtgtggagcatatataccattctg |
153 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32242420 |
gttgatgttccagtgtggagcatatatgccattctg |
32242455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 32248150 - 32248285
Alignment:
| Q |
18 |
actgtcctcttcttacattgtcgtcgaacactgcgttaccttggcagttcactatcctaactcttccttgtcctcttatcacgtacaataggctgttggc |
117 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
32248150 |
actgtccccttcttacattgtcatcgaacaccgcgttgccttggcagttcactatcctaactcttccttgtcctctaatcacgtacaaaaggctgttggc |
32248249 |
T |
|
| Q |
118 |
gttgatgttccagtgtggagcatatataccattctg |
153 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32248250 |
gttgatgttccagtgtggagcatatatgccattctg |
32248285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 249 - 424
Target Start/End: Complemental strand, 30605136 - 30604961
Alignment:
| Q |
249 |
taccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttg |
348 |
Q |
| |
|
|||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| || || |||||||||||| |
|
|
| T |
30605136 |
taccctgtagaggactacgtattcggcaccaagacgtaaattgcggaggattgggagggttaaactgttgacggtgctgattcgtccggcacgtgggttg |
30605037 |
T |
|
| Q |
349 |
tagagatctgcatgtgcagggcgagcgatgttctccacaagtctt-gcactgcagatagtttcttccaaaccattct |
424 |
Q |
| |
|
||||| |||||| |||||||| |||| ||||||| | | | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30605036 |
tagaggtctgcacgtgcagggtgagctatgttct-cgcgaatcttcgcactgcagatagtttcttccaaaccattct |
30604961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 30605446 - 30605327
Alignment:
| Q |
37 |
gtcgtcgaacactgcgttaccttggcagttcactatcctaactcttccttgtcctcttatcacgtacaataggctgttggcgttgatgttccagtgtgga |
136 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||| | | ||||||||||| |
|
|
| T |
30605446 |
gtcgtcgaacacggcgtttccttcacagttcactatcctaactcttccttctcctgttagggcgtacattaggctgttggcgttcacggtccagtgtgga |
30605347 |
T |
|
| Q |
137 |
gcatatataccattctgcat |
156 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30605346 |
gcatatataccattctgcat |
30605327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University