View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17441_low_17 (Length: 414)
Name: NF17441_low_17
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 15260796 - 15261202
Alignment:
| Q |
1 |
catatattgtactttaatatgtcaacatctaatatagataagtgtgcatagttttcaacttacatgagtgtgtgtattaattgaaaatcgtactaagtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15260796 |
catatattgtactttaatatgtcaacatctaatatagataagtgtgcatagttttcaacttacatgagtgtgtgtattaattgaaaatcgtactaagtta |
15260895 |
T |
|
| Q |
101 |
gaaacatttgaactacgtttacttcacgccaatattttggaaagagaatctattctattcttagaacatcacaaaagtgagactatgaacagaaaacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
15260896 |
gaaacatttgaactacgtttacttcacgccaatattttggaaagaaaatctattctatt-ttagaacatcacaaaagagagactatgagcagaaaacaaa |
15260994 |
T |
|
| Q |
201 |
gtaggaaaggaagcacnnnnnnntgctttcaaaatgaaaagtacaatgaaagatgattcaatttcactctctaagacccttcttccatatacacttcatc |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15260995 |
gtaggaaaggaagcacaaaaaaatgctttcaaaatgaaaagtacaatgaaagatgattcaatttcactctctaagacccttcttccatatacacttcatc |
15261094 |
T |
|
| Q |
301 |
ttctacttctcatagctctcttacccattgttcttctttatttatacttttaccctttgtctcttacaaaatctcaaactcagcttcaccatgccactag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15261095 |
ttctacttctcatagctctcttacccattgttcttctttatttatacttttaccctttgtctcttacaaaatctcaaactcagcttcaccatgccactag |
15261194 |
T |
|
| Q |
401 |
ttcatctc |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
15261195 |
ttcttctc |
15261202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University