View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_low_18 (Length: 399)

Name: NF17441_low_18
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_low_18
NF17441_low_18
[»] chr7 (7 HSPs)
chr7 (17-391)||(46993091-46993464)
chr7 (250-381)||(39695157-39695288)
chr7 (243-392)||(7995013-7995162)
chr7 (262-391)||(7352340-7352468)
chr7 (282-363)||(11727326-11727407)
chr7 (278-388)||(46265276-46265386)
chr7 (194-234)||(12471870-12471910)
[»] chr8 (8 HSPs)
chr8 (189-391)||(44223297-44223499)
chr8 (250-391)||(17722390-17722531)
chr8 (189-391)||(7956310-7956512)
chr8 (251-391)||(35948903-35949043)
chr8 (246-335)||(34760832-34760921)
chr8 (282-350)||(9040519-9040587)
chr8 (282-371)||(3767646-3767735)
chr8 (198-234)||(9040440-9040476)
[»] chr1 (7 HSPs)
chr1 (184-383)||(25785760-25785959)
chr1 (250-391)||(16584834-16584975)
chr1 (282-391)||(1161403-1161512)
chr1 (250-383)||(8084062-8084195)
chr1 (250-391)||(18461184-18461325)
chr1 (247-391)||(11619990-11620134)
chr1 (251-335)||(42009995-42010079)
[»] scaffold0879 (1 HSPs)
scaffold0879 (246-391)||(550-695)
[»] chr4 (4 HSPs)
chr4 (246-391)||(24466285-24466430)
chr4 (247-391)||(4413526-4413670)
chr4 (250-391)||(23107877-23108022)
chr4 (251-391)||(28319260-28319400)
[»] scaffold0565 (1 HSPs)
scaffold0565 (250-390)||(1815-1955)
[»] chr5 (4 HSPs)
chr5 (250-391)||(16746391-16746532)
chr5 (251-391)||(19947784-19947924)
chr5 (250-351)||(16746550-16746651)
chr5 (250-347)||(31895971-31896068)
[»] chr3 (2 HSPs)
chr3 (255-391)||(46655595-46655731)
chr3 (282-391)||(11503296-11503405)
[»] chr2 (5 HSPs)
chr2 (250-371)||(4638229-4638350)
chr2 (250-391)||(31111488-31111629)
chr2 (251-392)||(13852238-13852379)
chr2 (294-391)||(36009278-36009375)
chr2 (282-371)||(38607073-38607162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (268-390)||(13839-13961)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 46993091 - 46993464
Alignment:
Q  17 caattgccatgacttttaaaaagctagaaaatcgagattctatgttgacatgagattattgttgtagtttgatgtaacgaagaaaacttgatgcaaaacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46993091 caattgccatgacttttaaaaagctagaaaatcgagattctatgttgacatgagattattgttgcagtttgatgtaacgaagaaaacttgatgcaaaacc 46993190  T
Q  117 aaatagagaagctacgttaatttatcataatggaagtgagttatgaatgttcttgagtagtgatagctaggaggtggaagtggttcggataaaaccgacg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |    
T  46993191 aaatagagaagctacgttaatttatcataatggaagtgagttatgaatgttcttgagtagtgatagctagg-ggtggaagtggttcggacaaaatcgatg 46993289  T
Q  217 aaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatgg 316  Q
    ||||||||||| |||| |        ||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  46993290 aaattgaaagttcaaatctaaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatgg 46993389  T
Q  317 tttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||    
T  46993390 tttttcatttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttactaatattatc 46993464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 39695157 - 39695288
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39695157 cttgtttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaac 39695256  T
Q  350 caatccaatgataaccacactctttattttac 381  Q
    |||||  ||||||||| ||||| |||||||||    
T  39695257 caatctgatgataacctcactccttattttac 39695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 243 - 392
Target Start/End: Original strand, 7995013 - 7995162
Alignment:
Q  243 atttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaacc 342  Q
    |||||| ||||||||| ||||||  ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  7995013 atttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaacc 7995112  T
Q  343 gatgaaccaatccaatgataaccacactctttattttactagtattatct 392  Q
    ||||||||||||| || |||||||||||| ||||||||||| ||||||||    
T  7995113 gatgaaccaatccgataataaccacactccttattttactaatattatct 7995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 262 - 391
Target Start/End: Complemental strand, 7352468 - 7352340
Alignment:
Q  262 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 361  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  362 aaccacactctttattttactagtattatc 391  Q
    |||||||||| ||||||||||| |||||||    
T  7352369 aaccacactccttattttactaatattatc 7352340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 11727407 - 11727326
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 363  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727407 caatcaaaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 46265386 - 46265276
Alignment:
Q  278 gaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 377  Q
    ||||||||| |||| ||||| |||||||||||||    |||| |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  378 ttactagtatt 388  Q
    |||||| ||||    
T  46265286 ttactattatt 46265276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 12471910 - 12471870
Alignment:
Q  194 aagtggttcggataaaaccgacgaaattgaaagtccaaacc 234  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  12471910 aagtggttcggataaaaccgatgaaattgaaaatccaaacc 12471870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 189 - 391
Target Start/End: Complemental strand, 44223499 - 44223297
Alignment:
Q  189 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 288  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        || ||||||||||||| || |||| ||| ||||||||| |||||||    
T  44223499 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaatcga 44223400  T
Q  289 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtatt 388  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||    
T  44223399 aaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaatatt 44223300  T
Q  389 atc 391  Q
    |||    
T  44223299 atc 44223297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 17722531 - 17722390
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||| | ||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  17722531 cttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaac 17722432  T
Q  350 caatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||| ||||||||||||||| ||| ||||||| |||||||    
T  17722431 caatccgatgataaccacactcattactttactaatattatc 17722390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 189 - 391
Target Start/End: Complemental strand, 7956512 - 7956310
Alignment:
Q  189 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 288  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        ||| || |||| || | | ||||||||| ||||  ||| |||||||    
T  7956512 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgctttgtttggtttgaaaccgattcgaaccaatcga 7956413  T
Q  289 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtatt 388  Q
    ||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||    
T  7956412 aaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactccttattttactaatatt 7956313  T
Q  389 atc 391  Q
    |||    
T  7956312 atc 7956310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 35948903 - 35949043
Alignment:
Q  251 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 350  Q
    |||||||| ||||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  35948903 ttgtttggttcggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaacc 35949002  T
Q  351 aatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||| |||||||| ||| || ||||||||||| |||||||    
T  35949003 aatccgatgataacaacattccttattttactaatattatc 35949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 34760921 - 34760832
Alignment:
Q  246 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 335  Q
    ||||||||||||| ||||||  ||||||| | ||| ||| | |||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  34760921 tgatcttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 9040519 - 9040587
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 350  Q
    ||||| |||| ||||| ||||||||||||||  |||||||||||| ||||||   ||||||||||||||    
T  9040519 caatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 3767735 - 3767646
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 371  Q
    ||||| |||| ||||||||||||||||||||  ||||||| |||| |||||||    |||||||||||| | || ||| ||||| |||||    
T  3767735 caatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactc 3767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 9040440 - 9040476
Alignment:
Q  198 ggttcggataaaaccgacgaaattgaaagtccaaacc 234  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9040440 ggttcggataaaaccgatgaaatcgaaagtccaaacc 9040476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 184 - 383
Target Start/End: Original strand, 25785760 - 25785959
Alignment:
Q  184 taggaggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatca 283  Q
    |||| |||| |||||||||||| |||||| |||||| ||||| | ||||||        ||  || ||||||||| ||||||||||| ||||| ||| ||    
T  25785760 tagggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaacca 25785859  T
Q  284 atcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 383  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  25785860 atcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttacta 25785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 16584975 - 16584834
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16584975 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaac 16584876  T
Q  350 caatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||  |||||||||| |||| ||||||||||| |||||||    
T  16584875 caatctgatgataaccaaactccttattttactaatattatc 16584834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 1161512 - 1161403
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 381  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  382 tagtattatc 391  Q
    || |||||||    
T  1161412 taatattatc 1161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 8084062 - 8084195
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| | ||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||     
T  8084062 cttgtttggtttggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaat 8084161  T
Q  350 caatccaatgataaccacactctttattttacta 383  Q
    |||||| ||||||||||||||| |||||||||||    
T  8084162 caatccgatgataaccacactccttattttacta 8084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 18461184 - 18461325
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||| | ||||||| ||||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18461184 cttgtttagttcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaac 18461283  T
Q  350 caatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||| ||||||||||||||| ||| |||| || |||||||    
T  18461284 caatccgatgataaccacactcattaatttattaatattatc 18461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 247 - 391
Target Start/End: Original strand, 11619990 - 11620134
Alignment:
Q  247 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 346  Q
    |||||||||||| || |||||||| |||||  ||  ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  11619990 gatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatg 11620089  T
Q  347 aaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||||||| ||||||  ||||||  ||||||||||| |||||||    
T  11620090 aaccaatccgatgatactcacactacttattttactaatattatc 11620134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 42010079 - 42009995
Alignment:
Q  251 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 335  Q
    |||||||| ||||||||||| |||||  || |||| ||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  42010079 ttgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 695 - 550
Alignment:
Q  246 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 345  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  695 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 596  T
Q  346 gaaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  595 gaaccaatccgatgataaccacactccttattttactaatattatc 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 24466430 - 24466285
Alignment:
Q  246 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 345  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24466430 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 24466331  T
Q  346 gaaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  24466330 gaaccaatccgatgataaccacactccttattttactaatattatc 24466285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 247 - 391
Target Start/End: Original strand, 4413526 - 4413670
Alignment:
Q  247 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 346  Q
    |||||||||||| ||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  4413526 gatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgata 4413625  T
Q  347 aaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||    
T  4413626 aaccaatccgatgataatcacactccttattttactagtattatc 4413670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 23108022 - 23107877
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| | ||||||||| ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23108022 cttgtttggtttggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaac 23107923  T
Q  350 c----aatccaatgataaccacactctttattttactagtattatc 391  Q
    |    ||||| |||||||||| |||| ||||||||||| |||||||    
T  23107922 caatcaatccgatgataaccatactccttattttactaatattatc 23107877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 391
Target Start/End: Complemental strand, 28319400 - 28319260
Alignment:
Q  251 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 350  Q
    |||||||| ||||||||||| || || ||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||| |||||| | |||||| |    
T  28319400 ttgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatc 28319301  T
Q  351 aatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||  ||||||||||||||| ||||||||||| |||||||    
T  28319300 aatctgatgataaccacactccttattttactaatattatc 28319260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 1955 - 1815
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  1955 cttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaac 1856  T
Q  350 caatccaatgataaccacactctttattttactagtattat 390  Q
    |||||| |||||||| |||||| ||||||||||| ||||||    
T  1855 caatccgatgataacaacactccttattttactaatattat 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 16746532 - 16746391
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746532 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746433  T
Q  350 caatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||    
T  16746432 caatccgatgataacctcactccttattttactaatattatc 16746391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 19947784 - 19947924
Alignment:
Q  251 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 350  Q
    |||||||| || |||||||| |||||  || |||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19947784 ttgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaacc 19947883  T
Q  351 aatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||| ||||||||||||||| ||||||||||| |||||||    
T  19947884 aatccgatgataaccacactccttattttactaatattatc 19947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 16746651 - 16746550
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746651 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746552  T
Q  350 ca 351  Q
    ||    
T  16746551 ca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 31895971 - 31896068
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatga 347  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  31895971 cttgtttggttcggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 255 - 391
Target Start/End: Original strand, 46655595 - 46655731
Alignment:
Q  255 ttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 354  Q
    |||| ||||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46655595 ttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatc 46655694  T
Q  355 caatgataaccacactctttattttactagtattatc 391  Q
    ||||||||||||||||  ||||||||||| |||||||    
T  46655695 caatgataaccacacttcttattttactaatattatc 46655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 11503405 - 11503296
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 381  Q
    |||||||||| |||||  |||||||||||||  | |||||||||| |||||||  ||||||||| |||| | || ||| ||||| |||||   |||||||    
T  11503405 caatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttac 11503306  T
Q  382 tagtattatc 391  Q
    || |||||||    
T  11503305 tattattatc 11503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 371
Target Start/End: Original strand, 4638229 - 4638350
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    |||||| || ||||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4638229 cttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaac 4638328  T
Q  350 caatccaatgataaccacactc 371  Q
    |||||| |||||||||||||||    
T  4638329 caatccgatgataaccacactc 4638350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 31111488 - 31111629
Alignment:
Q  250 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 349  Q
    ||||||||| |||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||    
T  31111488 cttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaac 31111587  T
Q  350 caatccaatgataaccacactctttattttactagtattatc 391  Q
    |||||   |||||||||||||  ||||||||||| |||||||    
T  31111588 caatctggtgataaccacacttcttattttactaatattatc 31111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 392
Target Start/End: Complemental strand, 13852379 - 13852238
Alignment:
Q  251 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 350  Q
    |||||||  ||||||||||| |||||  || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13852379 ttgtttgattcggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaacc 13852280  T
Q  351 aatccaatgataaccacactctttattttactagtattatct 392  Q
    ||||   |||||||||||||| |||||||| || ||||||||    
T  13852279 aatctgttgataaccacactccttattttattaatattatct 13852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 36009278 - 36009375
Alignment:
Q  294 atctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtattatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatc 36009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 38607073 - 38607162
Alignment:
Q  282 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 371  Q
    ||||| ||||||| || |||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactc 38607162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 390
Target Start/End: Original strand, 13839 - 13961
Alignment:
Q  268 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccac 367  Q
    ||||||| | ||| ||||| ||||||||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | || ||| ||||| |    
T  13839 aaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctc 13938  T
Q  368 actctttattttactagtattat 390  Q
    ||||   ||||||||| ||||||    
T  13939 actccccattttactattattat 13961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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