View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_19 (Length: 399)
Name: NF17441_low_19
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 51112663 - 51113020
Alignment:
| Q |
24 |
tgcatagctttcgtcagcagcataatgtttggtcttttcagaagcatcagtggcataatctctgattttcttagaagcatcccaagcatagcctttggtt |
123 |
Q |
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| T |
51112663 |
tgcatagctttcgtcagcagcataatgtttggtcttctcagaagcatcagtggcataatctctgattttcttagaagcatcccaagcatagcctttggtt |
51112762 |
T |
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| Q |
124 |
ttctcagcagcatcatgggcatggtcactggctttttgagcagtttccttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112763 |
ttctcagcagcatcatgggcatggtcactggctttttgagcagtttccttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgt |
51112862 |
T |
|
| Q |
224 |
ctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttgaagccaaggccttcggtgattttctctttggcccactcagtcca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112863 |
ctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttgaagccaaggccttcggtgattttctctttggcccactcagtcca |
51112962 |
T |
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| Q |
324 |
tgtctctgcggcttctttcccttcttttcctgtttctgatgctttgtttgcagtttcc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112963 |
tgtctctgcggcttctttcccttcttttcctgtttctgatgctttgtttgcagtttcc |
51113020 |
T |
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