View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_20 (Length: 398)
Name: NF17441_low_20
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 11060483 - 11060086
Alignment:
| Q |
1 |
tatacattgtcaaaagaacatgaaaaaagtagaattttaaagaattcgccaaattagttgtattctataacatacagtaacgctattacgcagtggctaa |
100 |
Q |
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| T |
11060483 |
tatacattgtcaaaagaacatgaaaaaagtagaattttaaagaattcaccaaattagttgtattctataacatacagtaacgctattacgcagtggctaa |
11060384 |
T |
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| Q |
101 |
atgatgaagggttaaagtttaagctattttacctctaatgcgcttgcttggatcaaagataagcattttctctagcaaatcaacagcacctggagacatg |
200 |
Q |
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| T |
11060383 |
atgatgaagggttaaagtttaagctattttacctctaatgcgcttgcttggatcaaagataagcattttctctagcaaatcaacagcacctggagacatg |
11060284 |
T |
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| Q |
201 |
ctgggaaacctagtggaaaagttttgttgtggatattgtggaagttgtcttacgtatctacgagcattctcactacgtagaaatccaaggctggcatcat |
300 |
Q |
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| T |
11060283 |
ctgggaaacctagtggaaaaattttgttgtggatattgtggaagttgtcttacgtatctacgagcattctcactgcgtagaaatccaaggctggcatcat |
11060184 |
T |
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| Q |
301 |
caggtgaacctatcagctgttagaaagaaaggacaattatcacacttcagttactctttaatcnnnnnnngagatggcatgaaaaggatcaaagaaat |
398 |
Q |
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| T |
11060183 |
caggtgaacctatcagctgttagaaagaaaggacaattgtcacacttcagttactttttaatcaaaaaaagagatggcatgaaaaggatcaaagaaat |
11060086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 41335821 - 41335871
Alignment:
| Q |
263 |
agcattctcactacgtagaaatccaaggctggcatcatcaggtgaacctat |
313 |
Q |
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| T |
41335821 |
agcattgtcacttcggagaaatccaaggctcgcatcatcaggtgaacctat |
41335871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 29766520 - 29766710
Alignment:
| Q |
128 |
tttacctctaatgcgcttgcttggatcaaagataagcattttctctagcaaatcaacagcacctggagacatgctgggaaacctagtggaaaagttttgt |
227 |
Q |
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| T |
29766520 |
tttacctgtaatgcgcctgtttggatcaaaaacaagcatcctctctaacaaatcaacagcaccaggagacatgttgggaaacctagcagcaaattgctgc |
29766619 |
T |
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| Q |
228 |
tgtggatattgtggaagttgtcttacgtatctacgagcattctcactacgtagaaatccaaggctggcatcatcaggtgaacctatcagct |
318 |
Q |
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| T |
29766620 |
cttggatattgaggaagctgttttacatatctacgagcattatcacttcgtataaatccaaggctggcgtcatcaggcgaacctatgagct |
29766710 |
T |
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