View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_22 (Length: 386)
Name: NF17441_low_22
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 31548581 - 31548940
Alignment:
| Q |
9 |
acatcatcataacagatataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgctacg |
108 |
Q |
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| T |
31548581 |
acatcatcacaacagatataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgctacg |
31548680 |
T |
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| Q |
109 |
actttcatccggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgannnnn |
208 |
Q |
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| T |
31548681 |
attttcatctggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctga-tatt |
31548779 |
T |
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| Q |
209 |
nncttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
308 |
Q |
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| T |
31548780 |
ttcttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
31548879 |
T |
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| Q |
309 |
cttctaagcgtctttgcaactcgtcgacaagtttttgttgcccttcaaattctgtccttgt |
369 |
Q |
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| T |
31548880 |
cttctaagcgtctttgcaactcgtcgacaagtttttgttgcccttcaaattctgtccttgt |
31548940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 369
Target Start/End: Complemental strand, 34650366 - 34650240
Alignment:
| Q |
243 |
ttaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatcttctaagcgtctttgcaactcgtcgacaagttt |
342 |
Q |
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| T |
34650366 |
ttaccaaaattgtattatgtaattctttcctcagcttctccccttctataagtttgtattctgcatctgccaatcgtttttgtaactcatttacgagttt |
34650267 |
T |
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| Q |
343 |
ttgttgcccttcaaattctgtccttgt |
369 |
Q |
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|||||| ||||| |||||||| ||||| |
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| T |
34650266 |
ttgttgtccttcgaattctgttcttgt |
34650240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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