View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_24 (Length: 381)
Name: NF17441_low_24
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 35231177 - 35231542
Alignment:
| Q |
1 |
aggaacaaggaaggtgaccggaaattccatggcaatatgttataaaatttaaaattatttcctttttcttttctagagagagaggtggaactcagtgttt |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35231177 |
aggaacaaggaaggtaaccggaaattccatggcaatatgttataaaatttaaaattatttcctttttcttttctagagaggg--gtggaactcagtgttt |
35231274 |
T |
|
| Q |
101 |
ctaataattttttactcnnnnnnnnnn------ttgacattagctataaagtttattaagggaccatgatattggccccgttcaaaattttgacgctatc |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||| || | ||| |||||||||||| |||||| |
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| T |
35231275 |
ctaataattttttactaaaaaaataaaataaaattgacattagctataaagtttattaacggaccatgat--tgcctccggtcaaaattttgatgctatc |
35231372 |
T |
|
| Q |
195 |
acacaatcaatatatctgtgattgttagatcaatatcggatagttcaaattttaagtttggtagttttaa-nnnnnnnaaaattaaatttacgttaaaat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| |
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| T |
35231373 |
acacaatcaatatatctgtgattgttagatcaatatcggatagttcaaattttaagtttgatagttttaatttttttaaaaattaaatttacattaaaat |
35231472 |
T |
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| Q |
294 |
ctaaaacgagtaccaaagcaacgagtgttccttggtatatgtgtttgagcattctttggtctaacttagt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231473 |
ctaaaacgagtaccaaagcaacgagtgttccttggtatatgtgtttgagcattctttggtctaacttagt |
35231542 |
T |
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