View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_26 (Length: 373)
Name: NF17441_low_26
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 18187800 - 18187444
Alignment:
| Q |
18 |
catgaaatccaaaaactttgtatagttttcaagcnnnnnnngttgtcaaaacagccacaagaattttatcaccaaaaagatgaaaatattgattgacaca |
117 |
Q |
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| T |
18187800 |
catgaaatccaaaaactttgtatagttttcaagcaaaaaaagttgtcaaaacagccacaagaattttatcaccaaaaagatgaaaatattgattgacaca |
18187701 |
T |
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| Q |
118 |
taccttatatctctttgaatcatgttcgtttggagaa------------gatgaagatgaagataaagatgaatgaagactatgatcagataaatcttca |
205 |
Q |
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| T |
18187700 |
taccttatatctctttgaatcatgttcgtttgaagaattctcttcaagtggagaagatgaagataaagatgaatgaagactatgatcagagaaatcttca |
18187601 |
T |
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| Q |
206 |
tgagcaaaaggaggagaaaattctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaat |
305 |
Q |
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| T |
18187600 |
tgagcaagatgaggagaaaattctgaggaagaatcattggtaggaacatcggtgttgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaat |
18187501 |
T |
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| Q |
306 |
cattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttctttgttca |
362 |
Q |
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| T |
18187500 |
cattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttctttgttca |
18187444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 18192686 - 18192458
Alignment:
| Q |
111 |
tgacacataccttatatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagc |
210 |
Q |
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| T |
18192686 |
tgacacataccttatatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagagaaatcttcatgacc |
18192587 |
T |
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| Q |
211 |
aaaaggaggagaaaattctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcatta |
310 |
Q |
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| T |
18192586 |
aagaggaggagaaaactccgaggaataat------------cgtcggtgttgcgtgtttgaaaaattgttctcccgaaaagctttatggttgaatcatta |
18192499 |
T |
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| Q |
311 |
gtca--tctcaggtatatatgttgaagaagtttttgttgtt |
349 |
Q |
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| T |
18192498 |
gtcatctctctggtatatatgttgaagaagtttttgttgtt |
18192458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 18229200 - 18229104
Alignment:
| Q |
227 |
tctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggta |
323 |
Q |
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| T |
18229200 |
tctgaggaaaaatcattggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggta |
18229104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 350
Target Start/End: Complemental strand, 18197205 - 18197010
Alignment:
| Q |
158 |
gaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaaattctga------ggaagaatcattggtaggaa |
251 |
Q |
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| T |
18197205 |
gaagaggaagacatagatgaatgaagactatgatgagataaatcttcatgaggaa---gcggagaaaattctgactctgaggaagaatcattggtagata |
18197109 |
T |
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| Q |
252 |
catcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttg |
350 |
Q |
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| T |
18197108 |
catcgatgttgtgtgttataaaaatcgttctcccaaaaagcgttatggttgaattattaatcatctcgggtatatctgtagaataagtttttgttgttg |
18197010 |
T |
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