View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_low_28 (Length: 356)

Name: NF17441_low_28
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_low_28
NF17441_low_28
[»] chr7 (3 HSPs)
chr7 (27-131)||(45632121-45632225)
chr7 (18-131)||(26643625-26643738)
chr7 (220-270)||(45632314-45632364)
[»] chr2 (2 HSPs)
chr2 (18-131)||(39905583-39905697)
chr2 (220-256)||(39905787-39905823)
[»] chr6 (2 HSPs)
chr6 (17-131)||(7368435-7368549)
chr6 (220-270)||(7368636-7368686)
[»] chr3 (3 HSPs)
chr3 (59-129)||(53159747-53159817)
chr3 (220-270)||(53159611-53159661)
chr3 (27-63)||(53161067-53161103)
[»] chr4 (1 HSPs)
chr4 (18-131)||(51032644-51032761)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 45632121 - 45632225
Alignment:
Q  27 cgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaacaaataaatatggtgcattttttctaatgttttctcttattcata 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  45632121 cgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaacaattcaatatggtgcattttttctaatgttttctcttattcata 45632220  T
Q  127 ctgcc 131  Q
    |||||    
T  45632221 ctgcc 45632225  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 26643625 - 26643738
Alignment:
Q  18 ggaagaggccgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaacaaataaatatggtgcattttttctaatgttttctc 117  Q
    ||||||| |||| ||||| ||||| |||||||| ||||| |||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26643625 ggaagagaccgtgttttgccactacgacttcataccagtcgctaaagcgatccataaccggtaataactaaatatggtgcattttttctaatgttttctc 26643724  T
Q  118 ttattcatactgcc 131  Q
    ||||||||||||||    
T  26643725 ttattcatactgcc 26643738  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 45632314 - 45632364
Alignment:
Q  220 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 270  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45632314 ataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 45632364  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 39905583 - 39905697
Alignment:
Q  18 ggaagaggccgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaacaaataaatatggtgca-ttttttctaatgttttct 116  Q
    |||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  39905583 ggaagaggccgtgttttgtcactaggacttcataccagttgctaaaaagatccataaccggtaacaattaaatatggtgcatttttttctaatgttttct 39905682  T
Q  117 cttattcatactgcc 131  Q
     ||||||||||||||    
T  39905683 tttattcatactgcc 39905697  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 39905787 - 39905823
Alignment:
Q  220 ataactagagtgaccgtggcagttaaggtgtcgccgg 256  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  39905787 ataactggagtgaccgtgacagttaaggtgtcgccgg 39905823  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 7368435 - 7368549
Alignment:
Q  17 aggaagaggccgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaacaaataaatatggtgca-ttttttctaatgttttc 115  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||||||||||    
T  7368435 aggaagaggccgtattt-gtcactaggacttcattccaattgctacaacgatgcataaccggtaacaattcaatatggtgcatttttttataatgttttc 7368533  T
Q  116 tcttattcatactgcc 131  Q
    ||||||||||||||||    
T  7368534 tcttattcatactgcc 7368549  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 7368636 - 7368686
Alignment:
Q  220 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 270  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7368636 ataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 7368686  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 53159817 - 53159747
Alignment:
Q  59 ctacaacgatccataaccggtaacaaataaatatggtgcattttttctaatgttttctcttattcatactg 129  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  53159817 ctacaacgatccataaccggtaacaattcaatatggtgcattttttctaatgttttctcttattcatactg 53159747  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 53159661 - 53159611
Alignment:
Q  220 ataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatggg 270  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53159661 ataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatggg 53159611  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 53161103 - 53161067
Alignment:
Q  27 cgtattttgtcactaggacttcattccagttgctaca 63  Q
    |||||||||||||||||||||||||| ||||||||||    
T  53161103 cgtattttgtcactaggacttcattcaagttgctaca 53161067  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 51032761 - 51032644
Alignment:
Q  18 ggaagaggccgtattttgtcactaggacttcattccagttgctacaacgatccataacc---ggtaacaaataaatatggtgca-ttttttctaatgttt 113  Q
    |||||||||||| ||||| |||||  ||||||| || || |||| ||||||||||||||   ||||| || ||||||||||||| |||||||||||||||    
T  51032761 ggaagaggccgtgttttgccactacaacttcataccggtcgctaaaacgatccataaccggtggtaataattaaatatggtgcatttttttctaatgttt 51032662  T
Q  114 tctcttattcatactgcc 131  Q
    |||| |||||||||||||    
T  51032661 tctcctattcatactgcc 51032644  T

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