View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_29 (Length: 352)
Name: NF17441_low_29
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 33387496 - 33387162
Alignment:
| Q |
1 |
aaaattatgataagaatagaggacaaaaacttagggattctaagaaattgccacctttgatgaactatgatggaattggaaagcatggttatgagttaag |
100 |
Q |
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| T |
33387496 |
aaaattatgataagaatagaggacaaaaacttagggattctaagaaattgccacctttgatgaactatgatggaattggaaagcatggttatgagttaag |
33387397 |
T |
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| Q |
101 |
aagaagttgcaatgaatgtgccatttgtttggaagattttcaaaggggacaattgtgtcaagtttttcctgtttgcaagcacatttttcattcagattgt |
200 |
Q |
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| T |
33387396 |
aagaagttgcaatgaatgcgccatttgtttggaagattttcaaaggggacagttgtgtcaagtttttcctgtttgcaagcacatttttcattcagattgt |
33387297 |
T |
|
| Q |
201 |
atagatcattggttgcagaggaaattaacatgtcctatatgtcgtaattgtttatgaaagaaatagattaattgatgttattatcaaaattaattgatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387296 |
atagatcattggttgcagaggaaattaacatgtcctatatgtcgtaattgtttatgaaagaaatagattaattgatgttattatcaaaattaattgatgt |
33387197 |
T |
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| Q |
301 |
aaccatcaaaccagtatagttttgtatttgtttat |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33387196 |
aaccatcaaaccagtatagttttgtatttgtttat |
33387162 |
T |
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