View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17441_low_30 (Length: 345)
Name: NF17441_low_30
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_30 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
| [»] scaffold0153 (1 HSPs) |
| | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 38682939 - 38682619
Alignment:
| Q |
1 |
aggtgaagtgcaaagatt-atggaatgtttgagttctcttaaattaaaaatat--cagatattgcatttctgcaaagaatctacatgacagaggttcgac |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38682939 |
aggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaatatatatcagatattgcatttctgcaaagaatctacacgacagaggttcgac |
38682840 |
T |
|
| Q |
98 |
gtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatctactnnnnnnntctcaaagtctaccg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
38682839 |
gtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatctactaaaaaaatct-taagtctatc- |
38682742 |
T |
|
| Q |
198 |
tgtggcgagacagaaaaatctcaaggctaggtgcgagattgttagtagg---tacattttacattaaaaaatctctcaaaatccattactcacaacaatc |
294 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38682741 |
tgtggggagacag----------aggctaggtgtgagattgttagtaggtactacattttatactaaaaaatctctcaaaatccattactcacaacaatc |
38682652 |
T |
|
| Q |
295 |
cattaaaattcgtagaattttgaataccaataa |
327 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
38682651 |
cattaaaatccgtagaattttgaataccaataa |
38682619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 52023767 - 52024088
Alignment:
| Q |
1 |
aggtgaagtgcaaagatt-atggaatgtttgagttctcttaaattaaaaatatcagatattgcatttctgcaaagaatcta-catgacagaggttcgacg |
98 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
52023767 |
aggtgaagtgcaaagattgatggaatgtttgagttctcttaaaa-aaaaatatcagatattgcatttctgcaaagaatctatcacgacagaggttcgacg |
52023865 |
T |
|
| Q |
99 |
tcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatc-tactnnnnnnntctcaaagtctaccg |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||||| | |
|
|
| T |
52023866 |
tcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatacatgtatcttaaaaaaaaaatctccaagtcta-tg |
52023964 |
T |
|
| Q |
198 |
tgtggcgagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccat |
297 |
Q |
| |
|
||||| |||||| |||| ||| | |||||| |||||||||| ||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
52023965 |
tgtgg-gagacaaaaaagtct----gttaggtgtgagattgttactaggtacattttatactaaaaagtctcttaaaatccattactcacaacaatccat |
52024059 |
T |
|
| Q |
298 |
taaaattcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| |
|
|
| T |
52024060 |
taaaatccgtagaattttgattactaata |
52024088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 26005622 - 26005744
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26005622 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
26005721 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
26005722 |
ccgtagagttttgaataccaata |
26005744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 24150599 - 24150718
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24150599 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
24150698 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
24150699 |
ccgtagagttttgaatacca |
24150718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 38629567 - 38629686
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38629567 |
gagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
38629666 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
38629667 |
ccgtatagttttgaatacca |
38629686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 46251970 - 46252089
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46251970 |
gagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
46252069 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
46252070 |
ccgtaaagttttgaatacca |
46252089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 27593469 - 27593347
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| |||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27593469 |
gagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
27593370 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
27593369 |
ccttacaattttgaataccaata |
27593347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 30589149 - 30589037
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30589149 |
aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtaga |
30589050 |
T |
|
| Q |
311 |
attttgaatacca |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30589049 |
gttttgaatacca |
30589037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 50900214 - 50900333
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50900214 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacattaaacaatctcacaaaatccattactcacaacaatccattaaaat |
50900313 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
50900314 |
ctctagagttttgaatacca |
50900333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 13662861 - 13662748
Alignment:
| Q |
208 |
cagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgt |
307 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13662861 |
cagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaacccgt |
13662762 |
T |
|
| Q |
308 |
agaattttgaatac |
321 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
13662761 |
agtgttttgaatac |
13662748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 35731249 - 35731130
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||||||||||| |||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35731249 |
gagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
35731150 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
35731149 |
ccgtagagttttgaatacca |
35731130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 26293334 - 26293451
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| |||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
26293334 |
gagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaacaatcacacaaaatccattactcacaacaatccattaaaat |
26293433 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
26293434 |
ccgtagagttttgaatac |
26293451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 39338073 - 39338186
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| | || | |
|
|
| T |
39338073 |
aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctc--aaaatccattactcacaacaatccattaaaatccttaca |
39338170 |
T |
|
| Q |
311 |
attttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39338171 |
attttgaataccaata |
39338186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 26005770 - 26005869
Alignment:
| Q |
224 |
ctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaatacca |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
26005770 |
ctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaatacca |
26005869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 36054774 - 36054888
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| |||||| |||||||||| ||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36054774 |
gagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
36054873 |
T |
|
| Q |
304 |
tcgtagaattttgaa |
318 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
36054874 |
ccgtagagttttgaa |
36054888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 36786287 - 36786166
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||| ||||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
36786287 |
gagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaattcattaaaat |
36786189 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
36786188 |
ccttacaattttgaataccaata |
36786166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 26556114 - 26556036
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccatta |
282 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
26556114 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatta |
26556036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19551925 - 19551998
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatc |
277 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| |||| ||| || ||||||| |
|
|
| T |
19551925 |
gagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacactaaacaatttcacaaaatc |
19551998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 40013057 - 40013326
Alignment:
| Q |
1 |
aggtgaagtgcaaagatt-atggaatgtttgagttctcttaaattaaaaata--tcagatattgcatttctgcaaagaatctacatgacagaggttcgac |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
40013057 |
aggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaaaaaaaatcagatattgcatttctgcagagaatctacacgacagaggttcgac |
40013156 |
T |
|
| Q |
98 |
gtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtata---tatgtatctact-nnnnnnntctcaaagtct |
193 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
40013157 |
gtcacaaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatagtatgtatcttctaaaaaaaatctcaaagtct |
40013256 |
T |
|
| Q |
194 |
accgtgtggcgagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaa |
264 |
Q |
| |
|
| |||||| ||||||||||| ||||||||| | ||| ||||||||||||||||| |||||| | |||||| |
|
|
| T |
40013257 |
a-tgtgtggggagacagaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaaaaa |
40013326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 10802538 - 10802655
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10802538 |
gagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
10802637 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
10802638 |
ccgtagagttttgaatac |
10802655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 41965567 - 41965686
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41965567 |
gagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaataatctcacaaaatccattactcacaacaatccattaaaat |
41965666 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
41965667 |
atgtagagttttgaatacca |
41965686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 43605131 - 43605248
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43605131 |
gagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttacattaaacaatctcacaaaatccattactcacaacaatccattaaaat |
43605230 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
43605231 |
ccgtagagttttgaatac |
43605248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 2113108 - 2112989
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2113108 |
gagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
2113009 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
2113008 |
ccgtagagttttgaatacca |
2112989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 7148357 - 7148242
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7148357 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
7148258 |
T |
|
| Q |
304 |
tcgtagaattttgaat |
319 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
7148257 |
ccgtagagttttgaat |
7148242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 40265048 - 40265167
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40265048 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
40265147 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
40265148 |
ccatagagttttgaatacca |
40265167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 41386637 - 41386754
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41386637 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaat |
41386736 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
41386737 |
ccgtagagttttgaatac |
41386754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 29260043 - 29260162
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||||| |||||| ||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29260043 |
gagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
29260142 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
29260143 |
ccgtagagttttgaatacca |
29260162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 4655364 - 4655246
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| |||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
4655364 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaaacaatctcacaaaatccattactcataacaatccattaaaat |
4655265 |
T |
|
| Q |
304 |
tcgtagaattttgaatacc |
322 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
4655264 |
ccgtagagttttgaatacc |
4655246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 8502949 - 8502827
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8502949 |
gagacggaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaatccattaaaat |
8502850 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
8502849 |
ccgtagaattttaaataccaata |
8502827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 9457852 - 9457742
Alignment:
| Q |
212 |
aaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaa |
311 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9457852 |
aaaatctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagag |
9457753 |
T |
|
| Q |
312 |
ttttgaatacc |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
9457752 |
ttttgaatacc |
9457742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 42275290 - 42275172
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattg-ttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaa |
302 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
42275290 |
gagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccataaaaa |
42275191 |
T |
|
| Q |
303 |
ttcgtagaattttgaatac |
321 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
42275190 |
tccgtagagttttgaatac |
42275172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 28620161 - 28620042
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||| |||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
28620161 |
gagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtacattaaacaatctcacaaagttcattactcacaacaatccattaaaat |
28620062 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
28620061 |
ccgtagagttttgaatacca |
28620042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 4302587 - 4302697
Alignment:
| Q |
216 |
tctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaatttt |
315 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
4302587 |
tctcaaggctaggtgtgagattgttagtaggtacattttacactaaaaagtctcgctaaatccattactcacaacaatccattaaaatccttacaatttt |
4302686 |
T |
|
| Q |
316 |
gaataccaata |
326 |
Q |
| |
|
|||||| |||| |
|
|
| T |
4302687 |
gaatactaata |
4302697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 37567139 - 37567261
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| |||||| |||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37567139 |
gagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaaaagcctcacaaaatccattactcacaacaattcattaaaat |
37567238 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
37567239 |
ccgtacaattttgaataccaata |
37567261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 30382441 - 30382563
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| ||| || |||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
30382441 |
gagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaattgattactcacaacaatccattaaaat |
30382540 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
30382541 |
ccttacaattttgaataccaata |
30382563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 35142359 - 35142237
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||| ||||| ||| ||||||| || |||| |||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
35142359 |
gagaccgaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaaaaagtctcataaaatccattactcacaacaatctaataaaat |
35142260 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
35142259 |
ccgtaatattttgaataccaata |
35142237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 9209325 - 9209231
Alignment:
| Q |
232 |
gagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |||||| ||||| |||||||| | |||||||| | |||| ||||||||||||||| |
|
|
| T |
9209325 |
gagattgttagtaggtacattttacactaaaaagtctcacaaaataaattacccacaacaaactattaaaatccttagagttttgaataccaata |
9209231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 41965365 - 41965404
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagt |
243 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
41965365 |
gagatagaaaagtctcaaggctaggtgcgagattgttagt |
41965404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 204 - 320
Target Start/End: Complemental strand, 52109723 - 52109607
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52109723 |
gagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttacattaaacaatctcacaaaatccattactcacaacaatccattaaaat |
52109624 |
T |
|
| Q |
304 |
tcgtagaattttgaata |
320 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
52109623 |
ccgtagagttttgaata |
52109607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 44930192 - 44930074
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
44930192 |
gagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatcctttactcacaacaatccattaaaat |
44930093 |
T |
|
| Q |
304 |
tcgtagaattttgaatacc |
322 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
44930092 |
ccgtagagttttgaatacc |
44930074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 8880761 - 8880644
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
8880761 |
gagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaaaat |
8880662 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
8880661 |
ccgtagagttttgaatac |
8880644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 3435724 - 3435843
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
3435724 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaat |
3435823 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
3435824 |
ccgtagagttttgaatacca |
3435843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 8583772 - 8583891
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
8583772 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaaaat |
8583871 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
8583872 |
ccgtagagttttgaatacca |
8583891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 42218213 - 42218329
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
42218213 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaaaat |
42218312 |
T |
|
| Q |
304 |
tcgtagaattttgaata |
320 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
42218313 |
ccgtagagttttgaata |
42218329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 26336385 - 26336262
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||| |||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
26336385 |
gagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcacaataatccattaaaat |
26336286 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaataa |
327 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
26336285 |
ccttagaattttgaataccaataa |
26336262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 42721029 - 42720914
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||| | |||| |
|
|
| T |
42721029 |
aaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcacaacaacccattaaaatccttaga |
42720930 |
T |
|
| Q |
311 |
attttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42720929 |
attttgaataccaata |
42720914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 45332983 - 45332861
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||| |||| ||||||||||| |||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
45332983 |
gagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactcacaacaatccattaaaat |
45332884 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
45332883 |
ccttagaattttgaataccaata |
45332861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 45340673 - 45340551
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||| |||| ||||||||||| |||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
45340673 |
gagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactcacaacaatccattaaaat |
45340574 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
45340573 |
ccttagaattttgaataccaata |
45340551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 47685461 - 47685339
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
47685461 |
gagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaaaaagtctcgcaaaatctattactcacaacaatccattaaaat |
47685362 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
47685361 |
ccttacaattttgaataccaata |
47685339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 33449946 - 33450068
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| | | |||||| ||| |||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
33449946 |
gagacagaaaagtgttgaggctatgtgtgagattgttagtagatacattttacactaaaatgtctcacaaaatccattactcacaataatccattaaaat |
33450045 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33450046 |
ccgtagaattttgaataccaata |
33450068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 25936100 - 25935987
Alignment:
| Q |
207 |
acagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcg |
306 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||| ||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25936100 |
acagaaaagtctcaaggctag-tgtgagattgttaataggttcattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaattcg |
25936002 |
T |
|
| Q |
307 |
tagaattttgaatac |
321 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
25936001 |
atgagttttgaatac |
25935987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 54510015 - 54509909
Alignment:
| Q |
217 |
ctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttg |
316 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||| |||| |||||||||| ||| |||||||||||||||| | || ||||||| |
|
|
| T |
54510015 |
ctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccat---tcataacaatccattaaaatccttacaattttg |
54509919 |
T |
|
| Q |
317 |
aataccaata |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
54509918 |
aataccaata |
54509909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 7820363 - 7820298
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctc |
269 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
7820363 |
gagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttacactaaacaatctc |
7820298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 40144077 - 40143998
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaa-aatccatta |
282 |
Q |
| |
|
|||||| |||| |||||||| || ||| |||||||||||||||||||||||||| |||||| |||| ||| ||||||||| |
|
|
| T |
40144077 |
gagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaacaatccatta |
40143998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 40144014 - 40143971
Alignment:
| Q |
283 |
ctcacaacaatccattaaaattcgtagaattttgaataccaata |
326 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
40144014 |
ctcacaacaatccattaaaattcttacaattttgaataccaata |
40143971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 152175 - 152056
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
152175 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
152076 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
152075 |
ccgtagagttttgaatacca |
152056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 43057448 - 43057567
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43057448 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
43057547 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
43057548 |
ccgtagagttttgaatacca |
43057567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 204 - 320
Target Start/End: Complemental strand, 30111120 - 30111004
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| |||||| |||||||||| ||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30111120 |
gagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
30111021 |
T |
|
| Q |
304 |
tcgtagaattttgaata |
320 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
30111020 |
ccgtagagttttgaata |
30111004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 35089873 - 35089992
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||||||||||||| | ||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
35089873 |
gagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacattttataccaaacaatctcacaaaattcattactcacaacaatccattaaaat |
35089972 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
35089973 |
ccgtagagttttgaatacca |
35089992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 40097404 - 40097289
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||| | |||||||||||||||| |||| |||||||||||| ||| |||||||||||||||| | |||| |
|
|
| T |
40097404 |
aaaagtctcaaagctaggtgtgagattgttagtagatgcattttacattaaaaagtctcacaaaatccattagtcataacaatccattaaaatccttaga |
40097305 |
T |
|
| Q |
311 |
attttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40097304 |
attttgaataccaata |
40097289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 27418416 - 27418522
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| ||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27418416 |
aaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtaga |
27418515 |
T |
|
| Q |
311 |
attttga |
317 |
Q |
| |
|
|||||| |
|
|
| T |
27418516 |
gttttga |
27418522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 39301031 - 39301134
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | || | |
|
|
| T |
39301031 |
aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacatt------------aaaatccattactcacaacaatctattaaaatccttaca |
39301118 |
T |
|
| Q |
311 |
attttgaataccaata |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39301119 |
attttgaataccaata |
39301134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 47914096 - 47914149
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttaca |
257 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47914096 |
gagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttaca |
47914149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 47914879 - 47914941
Alignment:
| Q |
259 |
taaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaatac |
321 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
47914879 |
taaacaatctcacaaaatccattactcacaacaatccataaaaatctgtagagttttgaatac |
47914941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 29941262 - 29941143
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29941262 |
gagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
29941163 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
29941162 |
ccgtagagttttgaatacca |
29941143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 6289268 - 6289385
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6289268 |
gagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
6289367 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
6289368 |
ccgtagagttttgaatac |
6289385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 11535152 - 11535030
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| || ||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11535152 |
gagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
11535053 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
11535052 |
ccttacaattttgaataccaata |
11535030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 24193253 - 24193375
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| || ||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24193253 |
gagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
24193352 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
24193353 |
ccttacaattttgaataccaata |
24193375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 45547241 - 45547129
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
45547241 |
aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattacttacaacaatccattaaaatccgtaga |
45547142 |
T |
|
| Q |
311 |
attttgaatacca |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45547141 |
gttttgaatacca |
45547129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 11998185 - 11998306
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11998185 |
gagacaaaaaaatctcaaggct-ggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcacaacaaaccattaaaat |
11998283 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
11998284 |
ccttagaattttgaataccaata |
11998306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 20157524 - 20157646
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||| |||||||| |||||||||||||| | ||||||||| |||||| |||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
20157524 |
gagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccattactcataacaatctattaaaat |
20157623 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
20157624 |
ccttagaattttgaataccaata |
20157646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 34028700 - 34028821
Alignment:
| Q |
205 |
agacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaatt |
304 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||||| | ||||||||| |||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
34028700 |
agacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccattactcgtaacaatccattaaaatc |
34028799 |
T |
|
| Q |
305 |
cgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
34028800 |
cttataattttgaataccaata |
34028821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 24193873 - 24193743
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccatt----- |
298 |
Q |
| |
|
||||||||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
24193873 |
gagacagaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacagcaatccattaaaaa |
24193774 |
T |
|
| Q |
299 |
--aaaattcgtagaattttgaataccaataa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24193773 |
ttaaaattcgtagaattttgaataccaataa |
24193743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 45485631 - 45485552
Alignment:
| Q |
241 |
agtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaata |
320 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
45485631 |
agtaggtacattttacgctaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagaattttgaata |
45485552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 6476480 - 6476597
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6476480 |
gagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
6476579 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
6476580 |
ccgtagagttttgaatac |
6476597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 29834060 - 29834170
Alignment:
| Q |
212 |
aaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaa |
311 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29834060 |
aaaatctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagag |
29834159 |
T |
|
| Q |
312 |
ttttgaatacc |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
29834160 |
ttttgaatacc |
29834170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 29865494 - 29865604
Alignment:
| Q |
212 |
aaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaa |
311 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29865494 |
aaaatctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagag |
29865593 |
T |
|
| Q |
312 |
ttttgaatacc |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
29865594 |
ttttgaatacc |
29865604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 30878169 - 30878047
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||||||| || |||||||||||||| | ||||||||| |||||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
30878169 |
gagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccattactcataacaatccattaaaat |
30878070 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
30878069 |
ccttagaattttgaataccaata |
30878047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 10643779 - 10643901
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||| ||| |||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10643779 |
gagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
10643878 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || |||||||| |||||||| |
|
|
| T |
10643879 |
ccttacaattttgattaccaata |
10643901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 3110072 - 3110168
Alignment:
| Q |
224 |
ctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaata |
320 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
3110072 |
ctaggtgcgagattgtcagtatgtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaata |
3110168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 7858057 - 7858161
Alignment:
| Q |
68 |
tgcaaagaatctacatgacagaggttcgacgtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatg |
167 |
Q |
| |
|
||||||||| |||||||||| | |||| ||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
7858057 |
tgcaaagaacctacatgacatatgttctacgtcacgaatcaccacgatattttgtatccagcatgccaatgaagaaaatgtcttttcaaaagtgtatatg |
7858156 |
T |
|
| Q |
168 |
tatct |
172 |
Q |
| |
|
||||| |
|
|
| T |
7858157 |
tatct |
7858161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 7858198 - 7858263
Alignment:
| Q |
261 |
aaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaataccaata |
326 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
7858198 |
aaaagtctcacaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaata |
7858263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 40410907 - 40410790
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40410907 |
gagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
40410808 |
T |
|
| Q |
304 |
tcgtagaattttgaatac |
321 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
40410807 |
ccgtagagttttgaatac |
40410790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 17518746 - 17518623
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||| ||||| |||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
17518746 |
gagacagaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcgcaacattccattaaaat |
17518647 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaataa |
327 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
17518646 |
ccgtagaattttgaatcccaataa |
17518623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 6828566 - 6828681
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| ||| || |||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||| | || | |
|
|
| T |
6828566 |
aaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcataacaatccattaaaatccttaca |
6828665 |
T |
|
| Q |
311 |
attttgaataccaata |
326 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
6828666 |
attttgaatatcaata |
6828681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 10571428 - 10571306
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||| ||| |||| |||||| ||||||||||||| |||||||||| | |||||| | || ||||||||||| || ||||||||| |||||| | |
|
|
| T |
10571428 |
gagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaaaaagtttcacaaaatccattcctgacaacaatctattaaatt |
10571329 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
10571328 |
tcatagaattttgaataccaata |
10571306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 45318770 - 45318658
Alignment:
| Q |
211 |
aaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtaga |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45318770 |
aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtaga |
45318671 |
T |
|
| Q |
311 |
attttgaatacca |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45318670 |
gttttgaatacca |
45318658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 36402564 - 36402442
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| |||||||| ||| || |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36402564 |
gagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
36402465 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
36402464 |
ccttacaattttgaataccaata |
36402442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 1928171 - 1928293
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| || |||||||||||| |||||||||||||| | ||||||||| |||||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
1928171 |
gagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccattactcataacaatccattaaaat |
1928270 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1928271 |
ccttagaattttgaataccaata |
1928293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 26882598 - 26882712
Alignment:
| Q |
209 |
agaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgta |
308 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26882598 |
agaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgta |
26882697 |
T |
|
| Q |
309 |
gaattttgaatacca |
323 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
26882698 |
gagttttgaatacca |
26882712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 52705710 - 52705591
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||| ||||||||| | ||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52705710 |
gagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacattttacaccaaacaatctcacaaaatccattactcacaacaatccattaaaat |
52705611 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
52705610 |
ccgtagagttttgaatacca |
52705591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 29209072 - 29208950
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||| |||| || || ||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29209072 |
gagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
29208973 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
29208972 |
ccttagaactttgaataccaata |
29208950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 33243098 - 33243199
Alignment:
| Q |
225 |
taggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaataccaa |
324 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
33243098 |
taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaa |
33243197 |
T |
|
| Q |
325 |
ta |
326 |
Q |
| |
|
|| |
|
|
| T |
33243198 |
ta |
33243199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 33263271 - 33263372
Alignment:
| Q |
225 |
taggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaattttgaataccaa |
324 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
33263271 |
taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaa |
33263370 |
T |
|
| Q |
325 |
ta |
326 |
Q |
| |
|
|| |
|
|
| T |
33263371 |
ta |
33263372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 45535093 - 45535002
Alignment:
| Q |
212 |
aaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45535093 |
aaaatctcaaggctacgtgtgagattgttagtaggtacattttacactcaacaatctcaaaaaatccattactcacaacaatccattaaaat |
45535002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 10897117 - 10896995
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||||| |||| | |||||| |||||| |||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||| |
|
|
| T |
10897117 |
gagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttacattaaaatgtttcacaaaatccattactcataacaatccattaaaat |
10897018 |
T |
|
| Q |
304 |
tcgtagaattttgaataccaata |
326 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
10897017 |
cctaccaattttgaataccaata |
10896995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 9831867 - 9831784
Alignment:
| Q |
220 |
aaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| ||||||||||||| ||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9831867 |
aaggttaggtgtgagattgttagtaagtatattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaat |
9831784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 81549 - 81668
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
81549 |
gagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
81648 |
T |
|
| Q |
304 |
tcgtagaattttgaatacca |
323 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
81649 |
ccgtagagttttgaatacca |
81668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 21188 - 21298
Alignment:
| Q |
212 |
aaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaattcgtagaa |
311 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21188 |
aaaatctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagag |
21287 |
T |
|
| Q |
312 |
ttttgaatacc |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
21288 |
ttttgaatacc |
21298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 34581 - 34697
Alignment:
| Q |
204 |
gagacagaaaaatctcaaggctaggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcacaacaatccattaaaat |
303 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34581 |
gagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaat |
34680 |
T |
|
| Q |
304 |
tcgtagaattttgaata |
320 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
34681 |
ccgtagagttttgaata |
34697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 16348 - 16411
Alignment:
| Q |
225 |
taggtgcgagattgttagtaggtacattttacattaaaaaatctctcaaaatccattactcaca |
288 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
16348 |
taggtgtgagattgttagtaggtacactttacactaaacaatctcacaaaatccattactcaca |
16411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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