View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_32 (Length: 328)
Name: NF17441_low_32
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_32 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 10146838 - 10147164
Alignment:
| Q |
1 |
ttaaacaagttagttattctagtggttgaaaatttcatttggcgataaaagaaaagaacaaaatccacaacactccaggaatctctagaagacttaacat |
100 |
Q |
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| T |
10146838 |
ttaaaaaagttagttattctagtgattgtaaatttcatttggcgataaaagaaaagaacaaa-tccacaacactccacgaatctctagaagatttaacat |
10146936 |
T |
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| Q |
101 |
tgatagctaatatgcatcctaaagagttcaaaagatgacccaaatttcatgtgcactatcatgagagggccatcatgtgtaaaaacaaatttgcaaaatg |
200 |
Q |
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| T |
10146937 |
tgatagctaatatgcatcctaaagagttcaaaagatgacccaaatttcatgtgcactatcatgagagggccatcatgtgtaaaaacaaatttgcaaaatg |
10147036 |
T |
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| Q |
201 |
aacctatcaaaatcaaacaccttgaacttatattgacatgactatttatcgttacgtgttgtaaaatatcaactttatgtagctatttgcacaacataca |
300 |
Q |
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| T |
10147037 |
aacctatcaaaatcaaacaccttgaacttatattgacatgactatttatcgttacgtgttgtaaaatatcaactttatgtagctatttgcacaacataca |
10147136 |
T |
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| Q |
301 |
tatggtccaacaatattttttgcagtta |
328 |
Q |
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| T |
10147137 |
tatggtccaacaatattttttgcagtta |
10147164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 10145923 - 10145978
Alignment:
| Q |
7 |
aagttagttattctagtggttgaaaatttcatttggcgataaaagaaaagaacaaa |
62 |
Q |
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| T |
10145923 |
aagttagttattttagtggttgaaaatttcatttggcaataaaagaaaagaacaaa |
10145978 |
T |
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