View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_33 (Length: 294)
Name: NF17441_low_33
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 54474272 - 54474000
Alignment:
| Q |
19 |
acgaaaagacatcagatttatcagttagcttaccacttgatgcatactcaggagccatatacctgaattgatagccatatacaagtaggtagaaattatt |
118 |
Q |
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| T |
54474272 |
acgagaagacatcagatttatcagttagcttaccacttgatgcatactcaggagccatatacctgaattgatagccatatacaagtaggtagaaattatt |
54474173 |
T |
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| Q |
119 |
tggaatttgcaaaagattcatacataaataaatgtatatagtttgggttgaattattattggttaattacccaaatgttcccatcacacgagtagaaaca |
218 |
Q |
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| T |
54474172 |
tggaatttgcaaaagattcatacataaataaatgtatatagtttgggttgaattattat---ttaattacccaaatgttcccatcacacgagtagaaaca |
54474076 |
T |
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| Q |
219 |
tgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatggatagaatcacttgataattac |
294 |
Q |
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| T |
54474075 |
tgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatggatagaatcacttgataattac |
54474000 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 33145051 - 33145136
Alignment:
| Q |
183 |
aattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccaccta |
268 |
Q |
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| T |
33145051 |
aattacccgaatgttcccatgacacgagttgagacatgtgtattagtatcggtagtcaacttagccaatccaaaatcagccaccta |
33145136 |
T |
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