View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_35 (Length: 265)
Name: NF17441_low_35
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 30411073 - 30410878
Alignment:
| Q |
1 |
tacacgtgtaataatctcagcccccactctccttcacatctcat--------tttcctcttctcacctcgccgatcgttgctcgccgcttctctgccgcc |
92 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30411073 |
tacacgtgtaataatctcagctcacactctccttcacatctcatactatcattttcctcttctcacctcgccgatcgctgctcgccgcttctctgccgcc |
30410974 |
T |
|
| Q |
93 |
gtcgcctctcaatctctac-------caccgctcgcctattcattgttgttgcaaccctcccgctcgccgccgctcatctcataagtgcttctcta |
181 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30410973 |
gtcgcctctcaatctctaccgccgctcgccgctcgcctattcattgttgttgcaaccctcccgcttgccgccgctcatctcataagtgcttctcta |
30410878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 54751670 - 54751800
Alignment:
| Q |
1 |
tacacgtgtaataatctcagcccccactctccttcacatctc--------attttcctcttctcacctcgccgatcgttgctcgccgcttctctgccgcc |
92 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54751670 |
tacacgtgtaataatctcagctcacactctccttcacatctcatactctcattttcctcttctcacctcgccgatcgctgctcgccgcttctctgccgcc |
54751769 |
T |
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| Q |
93 |
gtcgcctctcaatctctaccaccgctcgcct |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
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|
| T |
54751770 |
gtcgcctctcaatctctaccgccgctcgcct |
54751800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 18022126 - 18022257
Alignment:
| Q |
1 |
tacacgtgtaataatctcagcccccactctccttcacatctc--------attttcctcttctcacctcgccgatcgttgctcgccgcttctctgccgcc |
92 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
18022126 |
tacacgtgtaataatctcagctcacactctccttcacatctcatactctcattttcctcttctcacatcgccgatcgctgctcgccgcttctctgccgcc |
18022225 |
T |
|
| Q |
93 |
g-tcgcctctcaatctctaccaccgctcgcct |
123 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |
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| T |
18022226 |
gctcgcctctcaatctctaccgccgctcgcct |
18022257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9180084 - 9179953
Alignment:
| Q |
1 |
tacacgtgtaataatctcagcccccactctccttcacatctcat--------tttcctcttctcacctcgccgatcgttgctcgccgcttctctgccgcc |
92 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
9180084 |
tacacgtgtaataatctcagctcacactctccttcacatctcatactctcattttcctcttctcacctcgccaatcgctgctcgccgcttctctgccgct |
9179985 |
T |
|
| Q |
93 |
g-tcgcctctcaatctctaccaccgctcgcct |
123 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |
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|
| T |
9179984 |
gctcgcctctcaatctctaccgccgctcgcct |
9179953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3925651 - 3925781
Alignment:
| Q |
1 |
tacacgtgtaataatctcagcccccactctccttcacatctc--------attttcctcttctcacctcgccgatcgttgctcgccgcttctctgccgcc |
92 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
3925651 |
tacacgtgtaataatctcggctcacactctccttcacatctcatactctcattttcctcttctcacctcgccgatcgctgctcgccgcttctttgccgcc |
3925750 |
T |
|
| Q |
93 |
g-tcgcctctcaatctctaccaccgctcgcc |
122 |
Q |
| |
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| ||||||||||||||||||| ||||||||| |
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|
| T |
3925751 |
gctcgcctctcaatctctaccgccgctcgcc |
3925781 |
T |
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