View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_37 (Length: 254)
Name: NF17441_low_37
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_37 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 36717463 - 36717708
Alignment:
| Q |
9 |
agcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatg |
108 |
Q |
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| T |
36717463 |
agcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatg |
36717562 |
T |
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| Q |
109 |
attttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgt |
208 |
Q |
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| T |
36717563 |
attttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgt |
36717662 |
T |
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| Q |
209 |
ttggaattcaccatgattctttgtttgataagatatatggttctct |
254 |
Q |
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| T |
36717663 |
ttggaattcaccatgattctttgtttgataagatatatggttctct |
36717708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 1482762 - 1482959
Alignment:
| Q |
41 |
taatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgta |
140 |
Q |
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| T |
1482762 |
taatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgta |
1482861 |
T |
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| Q |
141 |
tatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgata |
238 |
Q |
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| T |
1482862 |
tatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgata |
1482959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 1483261 - 1483329
Alignment:
| Q |
45 |
cttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgatttt |
113 |
Q |
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| T |
1483261 |
cttccacttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
107 |
tgattttgttgcaattttggtgtaatccattgtatatattac-aatgtatgactatagttttgaatcgaat |
176 |
Q |
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| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
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