View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_4 (Length: 637)
Name: NF17441_low_4
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 27695465 - 27696089
Alignment:
| Q |
1 |
atactctccatttcataatgagttacacatctttaannnnnnnnngcaggtctatcaaaagggaaagtgattactggtatgcttttcaaagccctgtgtt |
100 |
Q |
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| T |
27695465 |
atactcttcatttcataatgagttacacatctttaatttttttt-gcaggtctatcaaaagggaaagtgattgctggtatgcttttcaaagccctgtgtt |
27695563 |
T |
|
| Q |
101 |
gtttggcatagtgaatgataattataggaaattaagttgcatatttacttgaaattgatttgttttataatacgatgtgcaggtggaatactaggcccat |
200 |
Q |
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| T |
27695564 |
gtttggcatagtgaatgataattataggaaattaagttgcatatttacttgaaattgatttgttttataatacgatgtgcaggtggaatactaggcccat |
27695663 |
T |
|
| Q |
201 |
tttctcttatatttgttggagtcacagtatattgtatctatgtagcttgcattgaaaggaagaattacataagaatcaaaaagtttttgaaagattataa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27695664 |
tttctcttatatttgttggagtcacagtctattgtatctatgtagcttgcattgaaaggaagaattacataagaatcaaaaagtttttgaaatattataa |
27695763 |
T |
|
| Q |
301 |
agctcttaagccttccaggtactcttatgcagatataaaaagaatctcaaatcagtttaagcaagaactggggcagggagcttttggatctgtcttcaaa |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27695764 |
agctcttaagccttccaggtactcttatgcagatataaaaagaatctcaaatcagtttaaggaagaactggggcagggagcttttggatctgtcttcaaa |
27695863 |
T |
|
| Q |
401 |
ggaaaactctcaaacgaagttcaggtagctgttaaagttctaaacacttcaacaggaaatggccaagagttcatcaatgaaatggaagcaatgtgtcaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27695864 |
ggaaaactctcaaacgaagttcaggtagctgttaaagttctaaacacttcaacaggaaatggccaagagttcatcaatgaaatggaagcaatgtgtcaaa |
27695963 |
T |
|
| Q |
501 |
ttcaccacgtcaacgtggctcgcttggttggtttttgtgcagacggaaacaaacgagccttggtgtatgaatttttaccaaaaggttcgttgcagaattt |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27695964 |
ttcaccacgtcaacgtggctcgcttggttggtttttgtgcagatggaaacaaacgagccttggtgtatgaatttttaccaaaaggttcgttgcagaattt |
27696063 |
T |
|
| Q |
601 |
catatcatctgcagacaataatgatg |
626 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
27696064 |
catatcatctgcagacaataaggatg |
27696089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 446 - 603
Target Start/End: Original strand, 9495154 - 9495311
Alignment:
| Q |
446 |
acttcaacaggaaatggccaagagttcatcaatgaaatggaagcaatgtgtcaaattcaccacgtcaacgtggctcgcttggttggtttttgtgcagacg |
545 |
Q |
| |
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||||| |||||||| || | |||||||||||||||| | | | ||||| |||||||||| |||||||| || | || ||| ||||| |||||||| || | |
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| T |
9495154 |
acttccacaggaaacggaccagagttcatcaatgaagtaggaacaatgagtcaaattcatcacgtcaatgttgttcacttagttggcttttgtgccgatg |
9495253 |
T |
|
| Q |
546 |
gaaacaaacgagccttggtgtatgaatttttaccaaaaggttcgttgcagaatttcat |
603 |
Q |
| |
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|| ||| |||||| | ||||| || | ||||||||| |||||||||||||| ||||| |
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| T |
9495254 |
gacacacacgagctcttgtgtacgagtatttaccaaatggttcgttgcagaaattcat |
9495311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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