View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_45 (Length: 237)
Name: NF17441_low_45
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31729079 - 31728852
Alignment:
| Q |
1 |
ttgaagagttaatttatgcatttggtggaccttggttatttggtctattacttggttgaaatttcttttggtggaccttcgga-------acaaatacat |
93 |
Q |
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| T |
31729079 |
ttgaagagttaatttatgcatgtggtggaccttggttatttggtctattacatggttgaaatttcttttggtggaccttcggagttcggaacaaatacat |
31728980 |
T |
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| Q |
94 |
gatattgtgtaagtaaatttcttttgtttaatcccttcagattccatagttgaaatttatggctgttgacattttttatttggtcaacttatcaggtatc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31728979 |
gatattgtgtaagtaaatttcttttgtttaatcccttcagattccatagttgaaatttatggctgttgacattttttatttggtcaacttatcaggtatc |
31728880 |
T |
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| Q |
194 |
ttgtaatgataactttcgcagacttcag |
221 |
Q |
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| T |
31728879 |
ttgtaatgataacttttgcagacttcag |
31728852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 51636157 - 51636047
Alignment:
| Q |
75 |
accttcggaacaaatacatgatattgtgtaagtaaatttcttttgtttaatcccttcagattccatagttgaaatttatggctgttgacattttttattt |
174 |
Q |
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| T |
51636157 |
accttctgaacaaatacatgatattgtgtaagtaaatttcttttgtctgatccttgcagattccttagttgaaatttctggctgttgacattttgtattt |
51636058 |
T |
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| Q |
175 |
ggtcaacttat |
185 |
Q |
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| T |
51636057 |
ggttaacttat |
51636047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51636596 - 51636545
Alignment:
| Q |
1 |
ttgaagagttaatttatgcatttggtggaccttggttatttggtctattact |
52 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
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| T |
51636596 |
ttgaagagttaatttatacatttggtggaccttggttgtttggtcttttact |
51636545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 51633462 - 51633425
Alignment:
| Q |
184 |
atcaggtatcttgtaatgataactttcgcagacttcag |
221 |
Q |
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| T |
51633462 |
atcaggtatcttgtaatgataatttttgcagacttcag |
51633425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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