View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_49 (Length: 219)
Name: NF17441_low_49
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_49 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 45967520 - 45967399
Alignment:
| Q |
96 |
gacttcatttctaacattcggatagagtaataaaaaatttcattgttagtcccgtaagtgtagctcagttgatagctatagtggatattatgtacat-gg |
194 |
Q |
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| T |
45967520 |
gacttgatttctaacgttcggataaagttataaaaa-tttcattgttagtcccgtaagtgtagctcagttggtagctacagtggatattatgtacatggg |
45967422 |
T |
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| Q |
195 |
ccggggttcgaaccccgaattcc |
217 |
Q |
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| T |
45967421 |
tcggggttcgaaccccgaattcc |
45967399 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 2098736 - 2098786
Alignment:
| Q |
138 |
ttgttagtcccgtaagtgtagctcagttgatagctatagtggatattatgt |
188 |
Q |
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| T |
2098736 |
ttgttagtcccataagtgtagctcagttggtagctacaatggatattatgt |
2098786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 7550008 - 7550037
Alignment:
| Q |
144 |
gtcccgtaagtgtagctcagttgatagcta |
173 |
Q |
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| T |
7550008 |
gtcccgtaagtgtagctcagttgatagcta |
7550037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 173
Target Start/End: Complemental strand, 25273180 - 25273151
Alignment:
| Q |
144 |
gtcccgtaagtgtagctcagttgatagcta |
173 |
Q |
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| T |
25273180 |
gtcccgtaagtgtagctcagttgatagcta |
25273151 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 20599504 - 20599428
Alignment:
| Q |
144 |
gtcccgtaagtgtagctcagttgatagctatagtggatattatgtac-atggccggggttcgaaccccgaattcccc |
219 |
Q |
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| T |
20599504 |
gtcccgtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattcccc |
20599428 |
T |
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