View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_low_50 (Length: 218)

Name: NF17441_low_50
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_low_50
NF17441_low_50
[»] chr4 (4 HSPs)
chr4 (16-201)||(21833255-21833440)
chr4 (20-94)||(553759-553833)
chr4 (168-218)||(21833440-21833490)
chr4 (115-171)||(7225237-7225293)
[»] chr1 (1 HSPs)
chr1 (16-163)||(19467409-19467556)
[»] chr7 (3 HSPs)
chr7 (25-163)||(10169037-10169175)
chr7 (25-163)||(10176562-10176700)
chr7 (16-162)||(10615645-10615791)
[»] chr3 (2 HSPs)
chr3 (75-162)||(13469686-13469773)
chr3 (39-94)||(51763391-51763446)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 21833255 - 21833440
Alignment:
Q  16 caacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttccagaattgctaatttcaatacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  21833255 caacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaatttcaatacc 21833354  T
Q  116 actgacctgttcctcatcgtggaatgtttccccttgctcgaagaactcgacgttagctaccccttatatagtgaaaagtgcattct 201  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  21833355 actgacctgttcctcatcgtcgaatgtttccccttgcacgaagaactcgacgttagctaccccttatatagtcaaaagtacattct 21833440  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 553833 - 553759
Alignment:
Q  20 aaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttcc 94  Q
    |||||||||||||||||| |||||||||||| |||  | |||||| |||| ||||||||||||||| | ||||||    
T  553833 aaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 21833440 - 21833490
Alignment:
Q  168 ttagctaccccttatatagtgaaaagtgcattctctatgttgaaggggtaa 218  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  21833440 ttagataccccttatatggtgaaaagtacattctctatgttgaaggggtaa 21833490  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 7225237 - 7225293
Alignment:
Q  115 cactgacctgttcctcatcgtggaatgtttccccttgctcgaagaactcgacgttag 171  Q
    ||||||| |||||||||||| ||| |||||||| |||||||||||||||||| ||||    
T  7225237 cactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgaccttag 7225293  T

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Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 19467409 - 19467556
Alignment:
Q  16 caacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttccagaattgctaatttcaatacc 115  Q
    ||||| || ||||||||||||| ||||||||||||||||  | |||||  |||| ||||||||||||||| |||||| |   |||||  |||||||||||    
T  19467409 caacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtttcgacattgcagatttcaatacc 19467508  T
Q  116 actgacctgttcctcatcgtggaatgtttccccttgctcgaagaactc 163  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||    
T  19467509 actgacctgttcctcatcgcggaatgttttcctttgctcgaagaactc 19467556  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 10169037 - 10169175
Alignment:
Q  25 caccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttccagaattgctaatttcaataccactgacctg 124  Q
    ||||||||||||| ||||||||||||||||  | |||||  |||  ||||||||||||||| ||||||||   |||| | |||| ||||| |||||| ||    
T  10169037 caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgatgattttaatactactgacttg 10169136  T
Q  125 ttcctcatcgtggaatgtttccccttgctcgaagaactc 163  Q
    || || ||||  |||||||| || ||||| |||||||||    
T  10169137 tttcttatcgcagaatgttttcctttgcttgaagaactc 10169175  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 10176562 - 10176700
Alignment:
Q  25 caccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttccagaattgctaatttcaataccactgacctg 124  Q
    ||||||||||||| ||||||||||||||||  | |||||  |||  ||||||||||||||| ||||||||   |||| | |||| ||||| |||||| ||    
T  10176562 caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgatgattttaatactactgacttg 10176661  T
Q  125 ttcctcatcgtggaatgtttccccttgctcgaagaactc 163  Q
    || || ||||  |||||||| || ||||| |||||||||    
T  10176662 tttcttatcgcagaatgttttcctttgcttgaagaactc 10176700  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 10615791 - 10615645
Alignment:
Q  16 caacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttccagaattgctaatttcaatacc 115  Q
    |||| |||||||  |||||||| ||||||| |||| |||  | |||||  |||| ||||||||||||||| ||||||||   || ||||| |||||||      
T  10615791 caaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagt 10615692  T
Q  116 actgacctgttcctcatcgtggaatgtttccccttgctcgaagaact 162  Q
    | ||| |||||||| || |  ||||||||||| || |||||||||||    
T  10615691 agtgatctgttccttattgcagaatgtttccctttactcgaagaact 10615645  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 13469686 - 13469773
Alignment:
Q  75 tgacctctctcccttgttccagaattgctaatttcaataccactgacctgttcctcatcgtggaatgtttccccttgctcgaagaact 162  Q
    ||||||||||| ||||||||   |||||||||||||||| || |||||||||||| || |  |||||||| || ||||| ||||||||    
T  13469686 tgacctctctcacttgttcccacattgctaatttcaatagcagtgacctgttccttattgcagaatgttttccgttgcttgaagaact 13469773  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 51763391 - 51763446
Alignment:
Q  39 atgggttgcgagtttttgcacaaaactttactactttgacctctctcccttgttcc 94  Q
    ||||||||||||||||| |||||||  |||| |||||||| |||||| ||||||||    
T  51763391 atgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

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