View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17441_low_8 (Length: 549)

Name: NF17441_low_8
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17441_low_8
NF17441_low_8
[»] chr4 (13 HSPs)
chr4 (1-542)||(21833450-21834009)
chr4 (341-462)||(1755035-1755156)
chr4 (357-462)||(641483-641588)
chr4 (349-490)||(3438082-3438223)
chr4 (57-173)||(53761012-53761128)
chr4 (113-238)||(7308230-7308355)
chr4 (293-462)||(55908104-55908273)
chr4 (306-490)||(1600930-1601114)
chr4 (192-240)||(1601177-1601225)
chr4 (306-418)||(53761252-53761364)
chr4 (191-240)||(371298-371347)
chr4 (349-462)||(547470-547583)
chr4 (186-238)||(8183616-8183668)
[»] chr6 (4 HSPs)
chr6 (288-526)||(6588700-6588941)
chr6 (35-144)||(6588459-6588568)
chr6 (42-173)||(6416809-6416940)
chr6 (365-533)||(6416446-6416614)
[»] chr3 (5 HSPs)
chr3 (306-496)||(51763835-51764025)
chr3 (42-179)||(51763583-51763720)
chr3 (42-173)||(13469857-13469988)
chr3 (366-542)||(13470184-13470360)
chr3 (384-525)||(514192-514333)
[»] chr5 (6 HSPs)
chr5 (291-542)||(28532182-28532439)
chr5 (35-144)||(28532580-28532689)
chr5 (341-462)||(32268029-32268150)
chr5 (306-542)||(41888937-41889176)
chr5 (348-453)||(41900966-41901071)
chr5 (192-240)||(41900804-41900852)
[»] chr1 (4 HSPs)
chr1 (288-462)||(19467876-19468050)
chr1 (35-239)||(19467623-19467827)
chr1 (365-462)||(17352198-17352295)
chr1 (196-238)||(7554870-7554912)
[»] chr7 (4 HSPs)
chr7 (288-542)||(10615064-10615318)
chr7 (306-516)||(10169525-10169735)
chr7 (306-516)||(10177050-10177260)
chr7 (50-163)||(10615440-10615553)
[»] chr8 (4 HSPs)
chr8 (106-159)||(17635904-17635957)
chr8 (106-179)||(18318891-18318964)
chr8 (106-240)||(18314885-18315019)
chr8 (348-408)||(27922699-27922759)
[»] chr2 (1 HSPs)
chr2 (293-462)||(1037040-1037209)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 21833450 - 21834009
Alignment:
Q  1 cttatatagtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccata 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  21833450 cttatatggtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccata 21833549  T
Q  101 aacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcag 200  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||  ||||||||||||||    
T  21833550 aacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcag 21833649  T
Q  201 ctctcctcgagagaccaacattgagttctttatccttttctagtagtagcgcttatgtcataccagacttcgctgcttcatattt--------------- 285  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||||  ||||| ||| |||||| || |||||| || |||                   
T  21833650 ctctccgtgagagaccaacattgagttctttatccttttctggtagtagcagttatggcatgccagacatcactgctttatgttttattggcttcactgc 21833749  T
Q  286 ---atattttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagg 382  Q
       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21833750 ttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaagg 21833849  T
Q  383 gaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatt 482  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833850 gaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatt 21833949  T
Q  483 tggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833950 tggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 21834009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 1755156 - 1755035
Alignment:
Q  341 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 440  Q
    |||||| |||||||||||||| | || ||||||||||||| | || |||||||||| | ||||||||| ||| || ||||||||||||||||||||||||    
T  1755156 tctttgaatatctcggatgagctgctgtactctattgcaatgaaaagtcttcctttgaagaggcttgtgcttggacattgcaccggctatagttatgatg 1755057  T
Q  441 gaatcttttgtttgttatccaa 462  Q
    |||||   ||||||||||||||    
T  1755056 gaatccgatgtttgttatccaa 1755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 641588 - 641483
Alignment:
Q  357 atgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgtt 456  Q
    ||||||| |||| ||||||||||| | |||| |||||||| ||||| ||||||||  | |||||||||||||||| ||||||||||||||| ||||||||    
T  641588 atgagtttctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgtt 641489  T
Q  457 atccaa 462  Q
    ||||||    
T  641488 atccaa 641483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 3438082 - 3438223
Alignment:
Q  349 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 448  Q
    |||| ||||||| ||||| | |||||||||||  | |||||||||||| |  ||||||||||| |  |||||||||||||||||||||| || |||||||    
T  3438082 tatcccggatgaattactttcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttt 3438181  T
Q  449 tgtttgttatccaaaggtcatggtgtccaacatttggatctt 490  Q
    | | ||||||||||  ||||  || | |||||||||||||||    
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 53761012 - 53761128
Alignment:
Q  57 cacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccat 156  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||| |   ||||| |||||||||||||| ||||||||||| |||||| |||| | |||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcat 53761111  T
Q  157 catgtttgattgtgatc 173  Q
    | ||||| | |||||||    
T  53761112 cttgtttaactgtgatc 53761128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 7308355 - 7308230
Alignment:
Q  113 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctcctcgaga 212  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||| || || ||| ||||| |||      ||||||||||| | ||||| |  ||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgaga 7308256  T
Q  213 gaccaacattgagttctttatccttt 238  Q
    ||||||||||| | ||||||||||||    
T  7308255 gaccaacattgcgctctttatccttt 7308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 462
Target Start/End: Original strand, 55908104 - 55908273
Alignment:
Q  293 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 392  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   ||||||||||| || || |  |||||||||| || ||||||||    
T  55908104 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc 55908203  T
Q  393 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 462  Q
    |||| |  || |||||||| | ||||||||||||||||| ||||| |||||| |  | ||||||||||||    
T  55908204 ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaa 55908273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 490
Target Start/End: Complemental strand, 1601114 - 1600930
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 405  Q
    ||||||||||||||||||||||||||   |||   | || |  |||||||||| |||| |||| ||||||||||| ||||  || |||||| | ||||||    
T  1601114 tgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggct 1601015  T
Q  406 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatctt 490  Q
    || |||   | ||| ||| ||||||||||||  |||| |  || |||||||||||||  ||||  || |||||||||||| ||||    
T  1601014 tgacctcgcatatttcactggctatagttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttctt 1600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  192 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 240  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 53761252 - 53761364
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 405  Q
    ||||||||||||||||||||| ||||| |||||    |||    || || ||| |||| |||||||||||||||| |||| |||||||||| || || ||    
T  53761252 tgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaaaggaatgtcttcctttgacaagtct 53761351  T
Q  406 tgtccttcgaaat 418  Q
    |||||||| ||||    
T  53761352 tgtccttcaaaat 53761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 371347 - 371298
Alignment:
Q  191 attgcttcagctctcctcgagagaccaacattgagttctttatccttttc 240  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttc 371298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 547583 - 547470
Alignment:
Q  349 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 448  Q
    ||||||||||  ||| |||| ||||||||||| ||||| | ||||||| |  | ||||||||| | ||||||   |||||||||||||| |||||| | |    
T  547583 tatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatct 547484  T
Q  449 tgtttgttatccaa 462  Q
    ||||| || |||||    
T  547483 tgttttttgtccaa 547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 8183616 - 8183668
Alignment:
Q  186 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttt 238  Q
    ||||||||||||| ||  | || ||||||||||||||||| ||||||||||||    
T  8183616 caggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt 8183668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 288 - 526
Target Start/End: Original strand, 6588700 - 6588941
Alignment:
Q  288 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 387  Q
    |||| |||| ||||||  ||||||||||| |||||||||||||| |||||  | ||||| ||||||| |||||||| |||||| ||||||||||| || |    
T  6588700 atttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaacg 6588799  T
Q  388 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcat---ggtgtccaacatttg 484  Q
    ||||||||| || || ||||| ||   | ||||  | |||  |  |||| ||||| |||||| |||||||||||   |||||    || |||||||||||    
T  6588800 tcttcctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaacatttg 6588899  T
Q  485 gatcttgaagataacatgtttctgaatgatcaacatgttgtc 526  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  6588900 gatcttgaagataataggtttctgaatgatcaacatgttgtc 6588941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 6588459 - 6588568
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | ||||| ||||| |||||| ||||||| || |||||||||||||||  ||| ||||| |||| |||||| |||||||||||||| || ||||    
T  6588459 ggggtacaggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaatt 6588558  T
Q  135 gtaagcttct 144  Q
    ||||||||||    
T  6588559 gtaagcttct 6588568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 6416940 - 6416809
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    ||||||| |||||||||||| | |||||||| || |||||||||||| | || ||  ||||||  ||||| |||||||| || ||  | || ||||||||    
T  6416940 aagctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagct 6416841  T
Q  142 tcttgaagaagccatcatgtttgattgtgatc 173  Q
    ||| ||||||| ||||||||||  ||||||||    
T  6416840 tctcgaagaagtcatcatgtttagttgtgatc 6416809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 533
Target Start/End: Complemental strand, 6416614 - 6416446
Alignment:
Q  365 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatcca 461  Q
    ||||||| |||||||||||||||||||||||| |||||| ||  ||| ||| ||||    ||   | |||||| || |||||| ||| ||||||||||||    
T  6416614 ctctactgtattgcaagggaaggtcttcctttgacgaggtttaccctccgacattgttttggcccccatagttctgctggaatatttcgtttgttatcca 6416515  T
Q  462 aaggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgt 533  Q
    |  |||| ||  ||||||||||| ||||||||  |     |||||| |||||||||||||||||||| ||||    
T  6416514 agtgtcaaggcatccaacatttgaatcttgaactt---tcgtttcttaatgatcaacatgttgtccaattgt 6416446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 496
Target Start/End: Original strand, 51763835 - 51764025
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 405  Q
    ||||||||||||||||||||| ||||  ||||     |||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||| |  |||||    
T  51763835 tgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaaggtcttcttttgaaaaggct 51763934  T
Q  406 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagat 496  Q
    |||||||| || |||||| ||||||||||||| ||||||| |||||||| |||||||  ||||  || |  |||||||||||||| |||||    
T  51763935 tgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtcaacgtttgaaacatttggatcttcaagat 51764025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 51763583 - 51763720
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| |||||||||  |||||||||| |||||| ||||||||| |  ||   || ||||||||    
T  51763583 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 51763682  T
Q  142 tcttgaagaagccatcatgtttgattgtgatcaaataa 179  Q
    |||  |||| | |||||||||||| |||||||||||||    
T  51763683 tctccaagatgtcatcatgtttgactgtgatcaaataa 51763720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 13469857 - 13469988
Alignment:
Q  42 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 141  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| | || || |||||||  | ||| ||||||||||| ||  | || ||||||||    
T  13469857 aagctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagct 13469956  T
Q  142 tcttgaagaagccatcatgtttgattgtgatc 173  Q
    ||| ||||||| ||||||||||  ||||||||    
T  13469957 tctcgaagaagtcatcatgtttagttgtgatc 13469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 542
Target Start/End: Original strand, 13470184 - 13470360
Alignment:
Q  366 tctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatccaa 462  Q
    |||||| |||||||||||||||||||||||| |||||| ||| ||| ||| ||||    ||   | ||||||||| |||||| ||| |||||||||||||    
T  13470184 tctactgtattgcaagggaaggtcttcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaa 13470283  T
Q  463 aggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 542  Q
      |||| ||  |||||||||| ||||||||   |    ||||||||||||||||||||||| |||| |||| ||| ||||    
T  13470284 gtgtcaaggcatccaacatttagatcttgagctt---ttgtttctgaatgatcaacatgttctccaattgtcttcgtttc 13470360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 525
Target Start/End: Original strand, 514192 - 514333
Alignment:
Q  384 aaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacattt 483  Q
    ||||||||||||||| ||| ||||| || || | ||| ||||||||  | |||||||||||||||| ||||||||||||| || |  |  | ||||||||    
T  514192 aaggtcttcctttaaggagacttgtgctccgtagttgtaccggctacggctatgatggaatcttttctttgttatccaaatgtaaatggatacaacattt 514291  T
Q  484 ggatcttgaagataacatgtttctgaatgatcaacatgttgt 525  Q
    | ||||| |||||  | | || || |||||||||||||||||    
T  514292 gaatcttcaagatgcccttttcctcaatgatcaacatgttgt 514333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 291 - 542
Target Start/End: Complemental strand, 28532439 - 28532182
Alignment:
Q  291 ttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtct 390  Q
    |||||| ||||||  ||||||| |||||||||||||||||| |||||  || |||  |||| || |||||||| |||||| |||||||||||| ||||||    
T  28532439 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 28532340  T
Q  391 tcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa------aggtcatggtgtccaacatttg 484  Q
    |||||| |  | |||||||||   |||| ||   |||||||||||||| ||| |||||||||||||||||||      | |||| ||| ||| |||||||    
T  28532339 tcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttccgacatttg 28532240  T
Q  485 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 542  Q
     || ||| |  ||  | |||||||||||||||||||||| ||||||||| ||| ||||    
T  28532239 tatattggacttagtaagtttctgaatgatcaacatgttatccagttgtcttcgtttc 28532182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 28532689 - 28532580
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | ||||| |||||| |||||  ||||||||| |||||||||||||||  ||| ||||| ||||  ||||| |||||||||||||| |  || |    
T  28532689 ggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaact 28532590  T
Q  135 gtaagcttct 144  Q
    ||||||||||    
T  28532589 gtaagcttct 28532580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 32268150 - 32268029
Alignment:
Q  341 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 440  Q
    |||||| ||||||| |||||||| |||| ||||||||||    || |||||||||| ||||||||||| || | | |||||||||||||||| |||  ||    
T  32268150 tctttgaatatctcagatgagttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattctg 32268051  T
Q  441 gaatcttttgtttgttatccaa 462  Q
    ||||| ||| |||  |||||||    
T  32268050 gaatcctttctttactatccaa 32268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 542
Target Start/End: Original strand, 41888937 - 41889176
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggc- 404  Q
    |||||||||||   ||||||||||||  ||||  ||||||| ||||||| |||||| | || | ||||||||||| | ||||| ||| ||| || |||      
T  41888937 tgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccgatgagatgctttcctctattgcaatgcaaggttttcttttgactaggtg 41889036  T
Q  405 -ttgtcctt-cgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatg 502  Q
     || ||| | | |||||||||||||| |||||||| |||||||||||||||  |||||||  || |   | |||||| |||||||||| || |||   |     
T  41889037 gttctccctacaaaattgcaccggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaatattgtt 41889136  T
Q  503 tttctgaatgatcaacatgttgtccagttgtattcatttc 542  Q
    ||||||||| || ||||||||||  |||||| ||||||||    
T  41889137 tttctgaatcataaacatgttgtggagttgtcttcatttc 41889176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 453
Target Start/End: Original strand, 41900966 - 41901071
Alignment:
Q  348 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatctt 447  Q
    ||||||| |||| ||| |||  |||||||||||   ||||||| ||||| || |||||||| || | |||||||||||| |||||||||  ||||||  |    
T  41900966 atatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaattgcaccggttatagttattctggaattat 41901065  T
Q  448 ttgttt 453  Q
    ||||||    
T  41901066 ttgttt 41901071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 41900804 - 41900852
Alignment:
Q  192 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 240  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttc 41900852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 288 - 462
Target Start/End: Original strand, 19467876 - 19468050
Alignment:
Q  288 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 387  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| || | | | | || ||||||| |||||  | ||||||||||||||| |||||||    
T  19467876 attttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacgggaagg 19467975  T
Q  388 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 462  Q
     || ||||| ||||||||||||||   | |||||   ||| |||| |||| ||||||||||||||||||||||||    
T  19467976 gctacctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 19467623 - 19467827
Alignment:
Q  35 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 134  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| | |    ||||  |||| |||||||| || ||||    
T  19467623 ggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaatt 19467722  T
Q  135 gtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctcctcgagagaccaacattgagttctttatc 234  Q
    |||||||||||||||| |  | |||||||   ||||||||||| |      | || |||||||| ||| |||  ||||||||||||||||| ||||||||    
T  19467723 gtaagcttcttgaagaggttaccatgttttggtgtgatcaaatgactattgctggaattgcttctgctatccgtgagagaccaacattgaggtctttatc 19467822  T
Q  235 ctttt 239  Q
     ||||    
T  19467823 gtttt 19467827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 17352295 - 17352198
Alignment:
Q  365 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 462  Q
    |||| ||||||||||| ||| ||| ||||||| | ||| |||||||||| | ||| ||| ||||| ||||||| |||||  |||| ||||||||||||    
T  17352295 ctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatccaa 17352198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 7554912 - 7554870
Alignment:
Q  196 ttcagctctcctcgagagaccaacattgagttctttatccttt 238  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  7554912 ttcagctctccatgagagaccaacattgaggtctttatccttt 7554870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 288 - 542
Target Start/End: Complemental strand, 10615318 - 10615064
Alignment:
Q  288 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 387  Q
    ||||||||| ||||||  ||||||||||||| ||||||||||||  |||||  | | || |||||||  || | ||  | ||||||||||||||||  ||    
T  10615318 attttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaagggtggg 10615219  T
Q  388 tcttcctttaacgaggcttgtccttcgaaattgcaccggcta---tagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttg 484  Q
    ||||||||| |||||| ||  ||| ||| ||||   |||| |   |||||||| |||||||| |||||| ||||||||  |||| ||  |||||||||||    
T  10615218 tcttcctttgacgaggtttaccctccgacattgtttcggccaccatagttatgctggaatctattgtttattatccaagtgtcaaggcttccaacatttg 10615119  T
Q  485 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttc 542  Q
    |||||||||  |     ||||||||||||||||||||||||||| |||| ||||||||    
T  10615118 gatcttgaacttcc---gtttctgaatgatcaacatgttgtccaattgtcttcatttc 10615064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 516
Target Start/End: Original strand, 10169525 - 10169735
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 405  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10169525 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10169624  T
Q  406 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 505  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10169625 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10169724  T
Q  506 ctgaatgatca 516  Q
    |||||||||||    
T  10169725 ctgaatgatca 10169735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 516
Target Start/End: Original strand, 10177050 - 10177260
Alignment:
Q  306 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 405  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10177050 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10177149  T
Q  406 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 505  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10177150 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10177249  T
Q  506 ctgaatgatca 516  Q
    |||||||||||    
T  10177250 ctgaatgatca 10177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 10615553 - 10615440
Alignment:
Q  50 tcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaag 149  Q
    |||||| ||||| | |||||||| ||||||||||||||| | || | |||||||| |||||| ||| |||||||| |  | || ||||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttcttgaag 10615454  T
Q  150 aagccatcatgttt 163  Q
    | | |||| |||||    
T  10615453 aggtcatcttgttt 10615440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 159  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 18318891 - 18318964
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 179  Q
    |||||| ||| |||||||||| ||||| || |||||||| ||||| ||||||||  |||| |||||||||||||    
T  18318891 tcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatacttgactgtgatcaaataa 18318964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 18314885 - 18315019
Alignment:
Q  106 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctc 205  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| | ||| |||||||||      | || |||||||  ||||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctc 18314984  T
Q  206 ctcgagagaccaacattgagttctttatccttttc 240  Q
    |  ||||||||||| ||||| ||||||||| ||||    
T  18314985 cgtgagagaccaactttgaggtctttatccatttc 18315019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 27922759 - 27922699
Alignment:
Q  348 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgt 408  Q
    |||||||||||||||| |||| ||||||||| |  ||| |||| ||||| |||||||||||    
T  27922759 atatctcggatgagttgctctcctctattgccaccgaacgtctacctttgacgaggcttgt 27922699  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 462
Target Start/End: Original strand, 1037040 - 1037209
Alignment:
Q  293 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 392  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   || |||||||| || || |  |||||||||| || ||||||||    
T  1037040 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttc 1037139  T
Q  393 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 462  Q
    |||| |  || |||||||| | |||||||||| |||||| ||||| |||||| |  | ||||||||||||    
T  1037140 ctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaa 1037209  T

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