View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17441_low_9 (Length: 545)
Name: NF17441_low_9
Description: NF17441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17441_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 24655076 - 24654556
Alignment:
| Q |
8 |
cgaagaatataacgcgatccatgtctgtccaccttgtgaaacccaatctagatttcaccaaatggcaagggattaggaaatttcgtccaacaattaacaa |
107 |
Q |
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| T |
24655076 |
cgaaaaatataacgcgatccatgtctgtacaccttgtgaaacccaatctagatttcaccaaatggcaagggattaggaaatttcgtccaacaattaacaa |
24654977 |
T |
|
| Q |
108 |
agttccaaaatatgaaaattctccatcatattagatatatcggactagactggccggtccaaattgatatcatattaggatctcatatcacaaaagtcca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24654976 |
agttccaaaatatgaaaattctccatcatattagatatatcggactagactggccggtccaaattgatatcatattaggatctcatatcacaaaagtcca |
24654877 |
T |
|
| Q |
208 |
tagagtaatgaggaatttcaattccacaagccattttgaaatttcggcaatatttgagactagattgtatgaaaccttaaatgtcaggattaaattgatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24654876 |
tagagtaatgaggaatttcaattccacaagccattttgaaatttcggcaatattagagactagattgtatgaaaccttaaatgtcaggattaaattgatt |
24654777 |
T |
|
| Q |
308 |
attcattccttttgttttctttgaaaaatatttatcttgtcgttcacttatctgttcagttttgtctccttttctttgcaattcatatttttctttgctt |
407 |
Q |
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| T |
24654776 |
attcattccttttgttttctttgaaaaatatttatcttgtcgttcacttatctgttcagttttgtctccttttctttgcaattcatatttttctttgctt |
24654677 |
T |
|
| Q |
408 |
acaatttaggatttaataattggtttgtcattgttcttgaagagcatgaagaattttcttttcattgcaatgatttggagctatgatagtttaatgcatg |
507 |
Q |
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| T |
24654676 |
acaatttaggatttaataattggtttgtcattgttcttgaagagcatgaagaattttcttttcattgcaatgatttggagctatgatagtttaatgcatg |
24654577 |
T |
|
| Q |
508 |
tattatttgcagagttaagca |
528 |
Q |
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||||||||||||||||||||| |
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| T |
24654576 |
tattatttgcagagttaagca |
24654556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 24683353 - 24683040
Alignment:
| Q |
23 |
gatccatgtctgtccaccttgtgaaacccaatctagatttcaccaaatggcaagggattaggaaatttcgtccaacaattaacaaagttccaaaatatg- |
121 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24683353 |
gatccaagtccgtacaccttgtgaaacccaatctagatttcaccaaagggcaagggattaggaaatttggtccaacaattaacaaagttccaaaatatga |
24683254 |
T |
|
| Q |
122 |
aaaattctccatcatattagatatatcggactagactggccggtccaaattgatatcatattaggatctcatatcacaaaagtccatagagtaatgagga |
221 |
Q |
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|||| ||||||| |||||||||| | ||||||||||||||||||||||||| | ||| ||||||| |||||||||||||| || ||||||||||| |
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| T |
24683253 |
aaaaaattccatcactttagatatatggagctagactggccggtccaaattgataggagattgggatctcgtatcacaaaagtccttacagtaatgagga |
24683154 |
T |
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| Q |
222 |
atttcaattccacaagccattttgaaatttcggcaatatttgagactagattgtatgaaaccttaaatgtcaggattaaattgattattcattccttttg |
321 |
Q |
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|||||||||||| ||| ||||||||||||| |||||||| | ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
24683153 |
atttcaattccaaaagtcattttgaaattt--gcaatattagggactagattgtataaaaccttaaattttaggattaaattgattattcattccttttg |
24683056 |
T |
|
| Q |
322 |
ttttctttgaaaaata |
337 |
Q |
| |
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|||||| |||||||| |
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| T |
24683055 |
ttttctacgaaaaata |
24683040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 24683041 - 24682938
Alignment:
| Q |
421 |
taataattggtttgtcattgttcttgaagagcatgaagaattttcttttcattgcaatgatttggagctatgatagtttaatgcatgtattatttgcaga |
520 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24683041 |
taataattggtttgtcattgttcttgatgagcatgaagaattttcttttcattgcaatgatttggagctatggtagtttaatgcatgtattatttgcaga |
24682942 |
T |
|
| Q |
521 |
gtta |
524 |
Q |
| |
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|||| |
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| T |
24682941 |
gtta |
24682938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 24686381 - 24686299
Alignment:
| Q |
382 |
tttgcaattcatatttttctttgcttacaatttaggattt-aataattggtttgtcattgttcttgaagagcatgaagaattt |
463 |
Q |
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|||||||| ||| ||||||||| || |||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
24686381 |
tttgcaatacatgtttttcttttctcacaatttagggttttaattattggtttgtcattgttcttgacgagcatgaagaattt |
24686299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 24719107 - 24719010
Alignment:
| Q |
382 |
tttgcaattcatatttttct-ttgcttacaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaattttcttttcattgcaa |
477 |
Q |
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||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||| |
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| T |
24719107 |
tttgcaattcatattttaccattttttacaatttagggatttaataattggtttgtcattgtacttgaggagcatgaagaatttacaattcattgcaa |
24719010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 523
Target Start/End: Complemental strand, 24691736 - 24691608
Alignment:
| Q |
395 |
tttttctttgcttacaattta-ggatttaataattggtttgtcattgttcttgaagagcatgaagaattttcttttcattgcaatgatttggagctatga |
493 |
Q |
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||||||||| || |||||||| |||||||||||||||| ||||||||| ||| | |||||||||||| || | |||||||||| ||| || |||| |
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| T |
24691736 |
tttttcttttctcacaatttatggatttaataattggtctgtcattgtacttaaggagcatgaagaacttacaattcattgcaactgtttcgaaatatgg |
24691637 |
T |
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| Q |
494 |
tagtttaatgcatgtattatttgcagagtt |
523 |
Q |
| |
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||| ||||| | |||||||||||||||||| |
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| T |
24691636 |
tag-ttaatacttgtattatttgcagagtt |
24691608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 24640548 - 24640466
Alignment:
| Q |
382 |
tttgcaattcatatttttctttgcttacaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaattt |
463 |
Q |
| |
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|||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||| ||| ||| | |||| |||||||||| |
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| T |
24640548 |
tttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaattt |
24640466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 24713931 - 24713849
Alignment:
| Q |
382 |
tttgcaattcatatttttctttgcttacaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaattt |
463 |
Q |
| |
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| T |
24713931 |
tttgctattcatcttattcttttctcacaatttagggatttaataattggtttgccattattcttaatgagcaggaagaattt |
24713849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 24717409 - 24717301
Alignment:
| Q |
216 |
tgaggaatttcaattccacaagccattttgaaatttcggcaatatttgagactagattgtatgaaaccttaaatgtcaggattaaattgattattcattc |
315 |
Q |
| |
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|||||| ||||||| |||||| |||||||||||||| ||||| | | |||| ||||| |||||||| ||| | |||| |||| |||||||||| || |
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| T |
24717409 |
tgaggattttcaatatcacaagtcattttgaaatttctgcaatttcagggactgaattgtctgaaacctgcaattttaggactaaactgattattcactc |
24717310 |
T |
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| Q |
316 |
cttttgttt |
324 |
Q |
| |
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||||||||| |
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|
| T |
24717309 |
cttttgttt |
24717301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 24675621 - 24675568
Alignment:
| Q |
408 |
acaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaa |
460 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||| |||| ||||||| |
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| T |
24675621 |
acaatttagggatttaataattgatttgtcattgtacttgaggagcgtgaagaa |
24675568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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