View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_high_11 (Length: 333)
Name: NF17442_high_11
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 3481859 - 3482156
Alignment:
| Q |
11 |
agaatatcgacatcaatttagaaacctggtttaccttagtggtcaatttataatcaccatgtttccaattcccattcctaacaaatcgatcacattccga |
110 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3481859 |
agaaaatcgacatcaatttagaaacttggtttaccttagtggtcaattgat---------gtttccaattcccattcctaacaaatcgatcacattccga |
3481949 |
T |
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| Q |
111 |
aatccttctaagaagtgaaagaatcaaaccaatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttcttta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3481950 |
aatccttctaagaagtgaaagaatcaaaccaatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttcttta |
3482049 |
T |
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| Q |
211 |
catttcttaacatcgatctgatcaacaccaacgctggagcttgaaattatttccagcttcggcaatgcatcaatgagttcggaatctgcgccggctgttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3482050 |
catttcttaacatcgatctgatcaacaccaacgctggagcttgaaattatttccagcttcggcaatgcatcaatgagttcggaatctgcgccggctgttg |
3482149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 3501326 - 3501600
Alignment:
| Q |
13 |
aatatcgacatcaatttagaaacctggtttaccttagtggtcaatttataatcaccatgtttccaattcccattcctaacaaatcgatcacattccgaaa |
112 |
Q |
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|||||| ||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || |||| |||||||||| |
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| T |
3501326 |
aatatcaacagcaatttagaaacttggtttaccttagtggtcaacttataatcaccatgtttccaattccctcttctaacatatggatcgcattccgaaa |
3501425 |
T |
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| Q |
113 |
tccttctaagaagtgaaagaatcaaaccaatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttctttaca |
212 |
Q |
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| T |
3501426 |
tctttctaagaagtgtaagaatcaatccaatagccaaatcagcaacatcatcagtcaaaacatcaggagtaatcgtcacacgaatccctctttccttaca |
3501525 |
T |
|
| Q |
213 |
tttcttaacatcgatctgatcaacaccaacgctggagcttgaaattatttccagcttcggcaatgcatcaatgag |
287 |
Q |
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|||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||| |
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| T |
3501526 |
tttcttaacatcgatctgatcaacaccaacactcaaactagaaattatttccagcttcggcaatgcatcaatgag |
3501600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 305
Target Start/End: Original strand, 3524801 - 3525068
Alignment:
| Q |
38 |
ggtttaccttagtggtcaatttataatcaccatgtttccaattcccattcctaacaaatcgatcacattccgaaatccttctaagaagtgaaagaatcaa |
137 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| ||| |||||| | ||||||||||| |||||||||||||||| | ||| ||||| |
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| T |
3524801 |
ggtttacctttgtggtcaatttataatcaccatgcttccaatttccacctctaacataacgatcacattcacaaatccttctaagaagcgtaagcatcaa |
3524900 |
T |
|
| Q |
138 |
accaatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttctttacatttcttaacatcgatctgatcaaca |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||| || ||| ||||||| ||||||||| | || ||||| || || ||| |||| ||||||| |
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| T |
3524901 |
accaatagccaaatcagcaacttcatcagtcaaaacatcaggtgtattcgtcacgcgaatccctttctccttacacttgccaagatcaatcttatcaaca |
3525000 |
T |
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| Q |
238 |
ccaacgctggagcttgaaattatttccagcttcggcaatgcatcaatgagttcggaatctgcgccggc |
305 |
Q |
| |
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||||| ||| |||| |||| ||||| |||||||| | ||| |||||||| || ||||| || ||||| |
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| T |
3525001 |
ccaacactgaagctcgaaacgatttcaagcttcggaagtgcttcaatgaggtcagaatcggcaccggc |
3525068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 3521291 - 3521554
Alignment:
| Q |
40 |
tttaccttagtggtcaatttataatcaccatgtttccaattcccattcctaacaaatcgatcacattccgaaatccttctaagaagtgaaagaatcaaac |
139 |
Q |
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||||||||||||||||| ||||| |||||||| ||||| | ||| | |||||||||||||||||||| ||||||| |||||||||| ||| ||||||| |
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| T |
3521291 |
tttaccttagtggtcaacttatagtcaccatgcttccagtctccacttctaacaaatcgatcacattcacaaatcctcctaagaagtgtaagcatcaaac |
3521390 |
T |
|
| Q |
140 |
caatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttctttacatttcttaacatcgatctgatcaacacc |
239 |
Q |
| |
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||||||| ||||||||||| ||||| ||||| ||||| || ||| ||||||||| ||||||| | || ||||| || |||| ||| |||| |||||||| |
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| T |
3521391 |
caatagctaaatcagcaacatcatcagtcaacacatcaggtgtattcgtcacacaaatccctttctccttacacttgttaagatcaatcttgtcaacacc |
3521490 |
T |
|
| Q |
240 |
aacgctggagcttgaaattatttccagcttcggcaatgcatcaatgagttcggaatctgcgccg |
303 |
Q |
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||||||| |||| |||| || || || || |||| |||||||||||| || ||||| |||||| |
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| T |
3521491 |
aacgctgaagctcgaaacaatctctagatttggcagtgcatcaatgagctcagaatcggcgccg |
3521554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 40 - 305
Target Start/End: Complemental strand, 3534986 - 3534721
Alignment:
| Q |
40 |
tttaccttagtggtcaatttataatcaccatgtttccaattcccattcctaacaaatcgatcacattccgaaatccttctaagaagtgaaagaatcaaac |
139 |
Q |
| |
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||||||||||| ||||| ||||||||||| | |||||||| ||| | ||||||||||||||||||||| ||||||| | |||||| | ||| ||||||| |
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| T |
3534986 |
tttaccttagttgtcaacttataatcaccgcgcttccaatttccacttctaacaaatcgatcacattccaaaatcctccgaagaagcgtaaggatcaaac |
3534887 |
T |
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| Q |
140 |
caatagccaaatcagcaacttcatctgtcaaaacatctggagtaatcgtcacacgaatccctctttctttacatttcttaacatcgatctgatcaacacc |
239 |
Q |
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|||||||||||||||||| ||||| ||||| ||||| || ||| |||| || ||||||||| | || ||||| | |||| ||| ||| ||||||||| |
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| T |
3534886 |
aaatagccaaatcagcaacatcatcagtcaacacatcaggtgtattcgttacgcgaatccctttctccttacacatgttaagatcaatcatatcaacacc |
3534787 |
T |
|
| Q |
240 |
aacgctggagcttgaaattatttccagcttcggcaatgcatcaatgagttcggaatctgcgccggc |
305 |
Q |
| |
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|||||| |||| |||| || || ||||||||||| || |||||||| | ||||| |||||||| |
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| T |
3534786 |
aacgctatagctggaaacaatctcaagcttcggcaacgcttcaatgaggttagaatcggcgccggc |
3534721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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