View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_high_17 (Length: 293)
Name: NF17442_high_17
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 576292 - 576443
Alignment:
| Q |
21 |
tagacattcaatctcagacttttgagatctctagaattaaatttgactctttcaaaaaatggattcaaaaatacatttaacatcttactataatttttat |
120 |
Q |
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| T |
576292 |
tagacattcaatctcgggcttttgagatctctagaattaaatttgactctttcaaaaaatggattcaaaaatacatttaacatcttactataatttttat |
576391 |
T |
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| Q |
121 |
tgaaagaatatccttctgtactttagagttttgatgaatatcagtatttggc |
172 |
Q |
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| T |
576392 |
tgaaagaatatccttctgtactttagagttttgatgaatatcagtatttggc |
576443 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 576517 - 576553
Alignment:
| Q |
248 |
tgtatacattattcaattaaaactttccaagtattat |
284 |
Q |
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| T |
576517 |
tgtatacattattcaattaaaactttccaagtattat |
576553 |
T |
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