View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17442_high_22 (Length: 274)

Name: NF17442_high_22
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17442_high_22
NF17442_high_22
[»] chr3 (6 HSPs)
chr3 (1-257)||(33251713-33251978)
chr3 (1-58)||(47219195-47219253)
chr3 (1-55)||(53649778-53649833)
chr3 (1-57)||(23511618-23511675)
chr3 (2-57)||(7328895-7328951)
chr3 (1-56)||(22909834-22909890)
[»] chr5 (5 HSPs)
chr5 (1-58)||(21375403-21375461)
chr5 (1-55)||(42291505-42291560)
chr5 (1-58)||(9805056-9805114)
chr5 (1-58)||(42086379-42086437)
chr5 (1-57)||(40117467-40117524)
[»] chr7 (6 HSPs)
chr7 (1-58)||(48551911-48551969)
chr7 (1-57)||(39474994-39475051)
chr7 (1-58)||(1797514-1797572)
chr7 (1-58)||(43861969-43862027)
chr7 (1-58)||(48244353-48244411)
chr7 (1-56)||(3353478-3353534)
[»] chr6 (4 HSPs)
chr6 (1-58)||(8888937-8888994)
chr6 (1-58)||(29444762-29444820)
chr6 (1-57)||(34954617-34954674)
chr6 (1-56)||(8938766-8938822)
[»] chr4 (2 HSPs)
chr4 (1-57)||(17080099-17080156)
chr4 (1-58)||(36145212-36145270)
[»] chr1 (8 HSPs)
chr1 (1-45)||(10336568-10336613)
chr1 (1-40)||(33498855-33498895)
chr1 (6-45)||(46929749-46929789)
chr1 (1-31)||(30927753-30927783)
chr1 (1-45)||(5504083-5504128)
chr1 (1-45)||(38791621-38791666)
chr1 (2-45)||(14254279-14254323)
chr1 (1-56)||(16263597-16263653)
[»] chr2 (5 HSPs)
chr2 (1-58)||(20116609-20116667)
chr2 (1-45)||(35443875-35443920)
chr2 (6-58)||(44548721-44548774)
chr2 (1-40)||(25549779-25549819)
chr2 (2-57)||(29422267-29422323)
[»] chr8 (2 HSPs)
chr8 (1-45)||(18374065-18374110)
chr8 (1-45)||(43027360-43027405)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 33251713 - 33251978
Alignment:
1 ctacgcatgagccggattagtcgtccac-tttgatggatcgaaaacgagtgcgaaagccnnnnnnnnnn---------gaaatcaatgatttacttcnnn 90  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||                   |||||||||||||||||||       
33251713 ctacgcatgagccggattagtcgtccacatttgatgggtcgaaaacgagtgcgaaagccaaaaaaaaaaaaaaaaaaagaaatcaatgatttacttcttt 33251812  T
91 nnnnatttgtttcctttttatgtggaaatattatgatatcattgaatggaaaagataatcaactaacgagtaaaatcatttctctaagatatccgttctt 190  Q
        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
33251813 ttt-atttgcttcctttttatgtggaaatattatgatatcattgaatggaaaagataatcaactaacgagtaaaatcatttctctaagatatcctttctt 33251911  T
191 tccactacttcctttatttacaagccctcacttcccgtccactcaaatggagccttagtgtattata 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
33251912 tccactacttcctttatttacaagccctcacttcccgtccactcaaatggagccttaatgtattata 33251978  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47219195 - 47219253
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||  |||||||||||    
47219195 ctacgcatgagccggattagtcgtccacctttgatgggtcggaaaccggtgcgaaagcc 47219253  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 53649778 - 53649833
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaa 55  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||  ||||||||    
53649778 ctacgcatgagccggattagtcgttcacctttgatggatcggaaaccggtgcgaaa 53649833  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23511618 - 23511675
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    ||||||||||| ||||||| ||||||| ||||||||| ||||||||  ||||||||||    
23511618 ctacgcatgagtcggattaatcgtccacctttgatgggtcgaaaaccggtgcgaaagc 23511675  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 7328895 - 7328951
Alignment:
2 tacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    |||||||||||||||||||||| ||| ||||| ||| ||||||||  ||||||||||    
7328895 tacgcatgagccggattagtcgcccacctttggtgggtcgaaaaccggtgcgaaagc 7328951  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22909834 - 22909890
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaag 56  Q
    |||||||||||||| ||||||||| || ||||||||| ||| |||| ||||||||||    
22909834 ctacgcatgagccgaattagtcgtgcacctttgatgggtcggaaaccagtgcgaaag 22909890  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21375403 - 21375461
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||    
21375403 ctacgcatgagtcggattagtcgtccatctttgatggatcggaaaccagtgcgaaagcc 21375461  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42291560 - 42291505
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaa 55  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||  ||||||||    
42291560 ctacgcacgagccggattagtcgtccacctttgatggatcggaaaccggtgcgaaa 42291505  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9805056 - 9805114
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||||||||||||||||||| ||||| ||| ||| ||||  |||||||||||    
9805056 ctacgcatgagccggattagtcgtccacctttggtgggtcggaaacaggtgcgaaagcc 9805114  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42086379 - 42086437
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||||||||||||||||||| ||||| ||| ||| ||||  |||||||||||    
42086379 ctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaagcc 42086437  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40117467 - 40117524
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    ||||||||||||||||||| |||| || ||||| ||||||||||||  ||||||||||    
40117467 ctacgcatgagccggattaatcgttcacctttggtggatcgaaaaccggtgcgaaagc 40117524  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48551911 - 48551969
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
48551911 ctacgtatgagccggattagtcgtccacctttgatggatcggaaaccggtgcgaaagcc 48551969  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39474994 - 39475051
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    ||||||||||||||||||||||||||| ||||  ||| |||||||| |||||||||||    
39474994 ctacgcatgagccggattagtcgtccacctttagtgggtcgaaaaccagtgcgaaagc 39475051  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1797514 - 1797572
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||  |||| ||||||    
1797514 ctacgcacgagccggactagtcgtccatctttgatggatcgaaaaccggtgcaaaagcc 1797572  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43862027 - 43861969
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    |||||||||||||||||||||| | || ||||| ||||||||||||  |||||||||||    
43862027 ctacgcatgagccggattagtcattcacctttggtggatcgaaaaccggtgcgaaagcc 43861969  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48244411 - 48244353
Alignment:
1 ctacgcatgagccggattagtcg-tccactttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||||||||||||||| ||  ||||| ||||||||||||  |||||||||||    
48244411 ctacgcatgagccggattagtcgctcacctttggtggatcgaaaaccggtgcgaaagcc 48244353  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3353478 - 3353534
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaag 56  Q
    ||||||| ||||||||||||||||||| ||||||||||||  ||||  |||||||||    
3353478 ctacgcacgagccggattagtcgtccacctttgatggatcagaaaccggtgcgaaag 3353534  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8888937 - 8888994
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||    
8888937 ctacgcatgagtcggattagtcgtccacctttgatggatcgaaaacca-tgcgaaagcc 8888994  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29444820 - 29444762
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    ||||||||||||||||||||| ||||| ||||| ||| ||| |||| ||||||||||||    
29444820 ctacgcatgagccggattagttgtccatctttggtgggtcggaaactagtgcgaaagcc 29444762  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34954674 - 34954617
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    ||||||||||||| ||||||||||||| ||||||||| ||| |||| | |||||||||    
34954674 ctacgcatgagccagattagtcgtccacctttgatgggtcggaaaccaatgcgaaagc 34954617  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8938766 - 8938822
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaag 56  Q
    |||||||||||||| |||||||||||| ||||||||| ||| ||||  |||||||||    
8938766 ctacgcatgagccgaattagtcgtccacctttgatgggtcggaaaccggtgcgaaag 8938822  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17080099 - 17080156
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    |||||||||||||||||||||||  || ||||||||||||||||||  ||||||||||    
17080099 ctacgcatgagccggattagtcgcacacctttgatggatcgaaaaccggtgcgaaagc 17080156  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36145270 - 36145212
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    |||| |||||||||||||||||||||| |||||||| |||| ||||  |||||||||||    
36145270 ctacacatgagccggattagtcgtccacctttgatgaatcggaaaccggtgcgaaagcc 36145212  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10336568 - 10336613
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaac 45  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||    
10336568 ctacgcatgagccggattaatcgtccacctttgatggatcgaaaac 10336613  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33498895 - 33498855
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcg 40  Q
    ||||||||||||||||||||||||||| |||||||||||||    
33498895 ctacgcatgagccggattagtcgtccacctttgatggatcg 33498855  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 46929789 - 46929749
Alignment:
6 catgagccggattagtcgtccac-tttgatggatcgaaaac 45  Q
    ||||||||||||||||||||||| |||||||||||||||||    
46929789 catgagccggattagtcgtccacttttgatggatcgaaaac 46929749  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30927783 - 30927753
Alignment:
1 ctacgcatgagccggattagtcgtccacttt 31  Q
    |||||||||||||||||||||||||||||||    
30927783 ctacgcatgagccggattagtcgtccacttt 30927753  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5504083 - 5504128
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaac 45  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||    
5504083 ctacgcatgagccggattagtcgtccacctttgatgggtcggaaac 5504128  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38791666 - 38791621
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaac 45  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||    
38791666 ctacgcatgagccgaattagtcgtccatctttgatggatcaaaaac 38791621  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 14254323 - 14254279
Alignment:
2 tacgcatgagccggattagtcgtcca-ctttgatggatcgaaaac 45  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||    
14254323 tacgcatgagccggattagtcgtccacctttgatgggtcggaaac 14254279  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16263597 - 16263653
Alignment:
1 ctacgcatgagccggattagtcgtccac-tttgatggatcgaaaacgagtgcgaaag 56  Q
    |||||||| ||||||| ||||||||||| |||||||||||| ||||  |||||||||    
16263597 ctacgcataagccggaatagtcgtccacttttgatggatcggaaaccggtgcgaaag 16263653  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20116667 - 20116609
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagcc 58  Q
    |||||||||||||||||||| |||||| ||||||||| ||| ||||  |||||||||||    
20116667 ctacgcatgagccggattagccgtccacctttgatgggtcggaaaccggtgcgaaagcc 20116609  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35443920 - 35443875
Alignment:
1 ctacgcatgagccggattagtcgtccact-ttgatggatcgaaaac 45  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||    
35443920 ctacgcatgagccggattagtcgtccattattgatggatcggaaac 35443875  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 44548774 - 44548721
Alignment:
6 catgagccggattagtcgtccac-tttgatggatcgaaaacgagtgcgaaagcc 58  Q
    |||||||| |||||||||||||| |||||||||||| ||||  |||||||||||    
44548774 catgagccagattagtcgtccacctttgatggatcggaaactggtgcgaaagcc 44548721  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25549779 - 25549819
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcg 40  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
25549779 ctacgcacgagccggattagtcgtccatctttgatggatcg 25549819  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 29422267 - 29422323
Alignment:
2 tacgcatgagccggattagtcgtcca-ctttgatggatcgaaaacgagtgcgaaagc 57  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||   ||||||||||    
29422267 tacgcacgagccggattagtcgtccacctttgatggatcggaaatcggtgcgaaagc 29422323  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18374065 - 18374110
Alignment:
1 ctacgcatgagccggattagtcgtcc-actttgatggatcgaaaac 45  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||    
18374065 ctacgcatgagccggattagtcgtccaactttggtgggtcgaaaac 18374110  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43027360 - 43027405
Alignment:
1 ctacgcatgagccggattagtcgtcca-ctttgatggatcgaaaac 45  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||    
43027360 ctacgcatgagccggattagtcgtccatctttgatgggtcggaaac 43027405  T

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