View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_high_33 (Length: 227)
Name: NF17442_high_33
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_high_33 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 2759991 - 2760211
Alignment:
| Q |
7 |
gtttaagagtgtggtagcaagaaggctctggttattcttgttgctgtaatgaacaccaatagatacagtgttgtaagatacatgatgatagtcgtagttg |
106 |
Q |
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| T |
2759991 |
gtttaagagtgtggtagcaagaaggctttggttattcttgttgctgtaatgaacaccaatagaaacagtgttgtaagatacacgatgatagtcgtagttg |
2760090 |
T |
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| Q |
107 |
gggtttgacacgaagagggtaatatcccattcggcagtgagtttagaaccgtttatattaagtgaattgatggaagctaagtcgactccaaaccttggag |
206 |
Q |
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| T |
2760091 |
gggtttgacacgaagagggtaatatcccattcggcagtgagtttagaacagtttatattaagtgacttgatggaagctaagtcgactccaaacattggag |
2760190 |
T |
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| Q |
207 |
tactagggcccaagcttacaa |
227 |
Q |
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| T |
2760191 |
tactagggcccaagcttacaa |
2760211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 2764357 - 2764572
Alignment:
| Q |
8 |
tttaagagtgtggtagcaagaaggctctggttattcttgttgctgtaatgaacaccaatagatacagtgttgtaagatacatgatgatagtcgtagttgg |
107 |
Q |
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| T |
2764357 |
tttaaaagtgtggtagcaagaaggctttggttattcttgttgttgtaattaacaccaattgaagcagtgtcgtaagatacaggatgaaaattttcgttag |
2764456 |
T |
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| Q |
108 |
ggtttgacacgaagagggtaatatcccattcggcagtgagtttagaaccgtttatattaagtgaattgatggaagctaagtcgactccaaaccttggagt |
207 |
Q |
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| T |
2764457 |
ggtttgacacaatgagagtaatatcccattcggcagtgagtttagaaccgtttatattaagtgagttgatcgtagccaagtcgactcgaaaccttggtgt |
2764556 |
T |
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| Q |
208 |
actagggcccaagctt |
223 |
Q |
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| T |
2764557 |
tctagggcccaggctt |
2764572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 2769242 - 2769378
Alignment:
| Q |
7 |
gtttaagagtgtggtagcaagaaggctctggttattcttgttgctgtaatgaacaccaatagatacagtgttgtaagatacatgatgatagtcgtagttg |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
2769242 |
gtttaagagtgtggtagcaagaaggctatggttattcttgttgatgtaactaacaccaatagaaacagtgtcgtaagatacaggatgatagtcgtagttg |
2769341 |
T |
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| Q |
107 |
gggtttgacacgaagagggtaatatcccattcggcag |
143 |
Q |
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| T |
2769342 |
gggtttgacacgtagagggtaacatcccattcggcag |
2769378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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