View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_high_35 (Length: 219)
Name: NF17442_high_35
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 41689044 - 41689236
Alignment:
| Q |
11 |
gagcagagaaaagcctaagagagcaccaatacaaatccagtaccaataatcttctgtaaacatgcttctagccttgagaagagccttcccaactgtaggt |
110 |
Q |
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| T |
41689044 |
gagcagtgaaaagcctaagagagcaccaatacaaatccagtaccaataatcttctgtaaacatgcttctagccttgagaagagccttcccaactgtaggt |
41689143 |
T |
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| Q |
111 |
tcaggaattcttggatctaaatttggctgtaaagcatcattgaatatatttgactttaatcatatctatcttaaaagtcagtataaaaagttt |
203 |
Q |
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| T |
41689144 |
tcaggaattcttggatctaaatttggctgtaaagcatcattgaatatatttgactttaatcatatctatcttaaaagtcagtataaaaagttt |
41689236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 19541081 - 19540983
Alignment:
| Q |
15 |
agagaaaagcctaagagagcaccaatacaaatccagtaccaataatcttctgtaaacatgcttctagccttgagaagagccttcccaactgtaggttca |
113 |
Q |
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| T |
19541081 |
agagaaaatcctacaagagcaccgatagatatccaataccaatagtcttctgtaaatatgcctctggccttaagaaaggccttcccaactgtgggttca |
19540983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 1255181 - 1255213
Alignment:
| Q |
157 |
tatttgactttaatcatatctatcttaaaagtc |
189 |
Q |
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| T |
1255181 |
tatttgactttaatcatatctaccttaaaagtc |
1255213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 43527867 - 43527769
Alignment:
| Q |
15 |
agagaaaagcctaagagagcaccaatacaaatccagtaccaataatcttctgtaaacatgcttctagccttgagaagagccttcccaactgtaggttca |
113 |
Q |
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| T |
43527867 |
agagaaaatcctataagagcacggatagatatccaataccaatagtcttctgtaaatatgcctctggccttaagaaaggccttcccaaccgtgggttca |
43527769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 22237840 - 22237806
Alignment:
| Q |
156 |
atatttgactttaatcatatctatcttaaaagtca |
190 |
Q |
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| T |
22237840 |
atatttgactttaatcatatctaccttaaaagtca |
22237806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 11615300 - 11615344
Alignment:
| Q |
146 |
atcattgaatatatttgactttaatcatatctatcttaaaagtca |
190 |
Q |
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| T |
11615300 |
atcattaaaaatatttgactttaatcatatctaactcaaaagtca |
11615344 |
T |
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