View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_high_4 (Length: 486)
Name: NF17442_high_4
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 470
Target Start/End: Original strand, 47354438 - 47354898
Alignment:
| Q |
12 |
atgaagataatgaagtccttgcaggatctgtctacaccaatgcttcactgctctaatattaaccctcttgtgctttagcctatacctatttcatcaatta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47354438 |
atgaagataatgaagtccttgcaggatctgtctacaccaatgcttcactgctctaatattaaccctcttgtgctttagcctatacctatttcatcaatta |
47354537 |
T |
|
| Q |
112 |
aatcaagttaaataatatccaacacaagatctcaaaagcacnnnnnnnnnnnnnnnnnn--taacgaatcttatcatcatgatatagttaaaaatcaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47354538 |
aatcaagttaaataatatccaacacaagatctcaaaagcacaaaaaaaaataaaaaaaaaataacgaatcttatcatcatgatatagttaaaaatcaaga |
47354637 |
T |
|
| Q |
210 |
gaactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47354638 |
gaactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgtt |
47354737 |
T |
|
| Q |
310 |
tttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttcggggttttgtaggaaatcatatagtttgatttgattccaagca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47354738 |
tttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttcggggttttgtaggaaatcatatagtttgatttgattccaagca |
47354837 |
T |
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| Q |
410 |
acttcaatcccttgatactcatcaaatgctctatatctgcatcaattcaaacccaaaaatc |
470 |
Q |
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| T |
47354838 |
acttcaatcccttgatactcatcaaatgctctatatctgcatcaattcaaacccaaaaatc |
47354898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 210 - 455
Target Start/End: Complemental strand, 36199750 - 36199505
Alignment:
| Q |
210 |
gaactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgtt |
309 |
Q |
| |
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||||| ||||||| || |||||||| || |||| ||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||| |
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| T |
36199750 |
gaacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaatattcctattagcagtatccacccaagaggtgtaaaatttcataatgtt |
36199651 |
T |
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| Q |
310 |
tttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttcggggttttgtaggaaatcatatagtttgatttgattccaagca |
409 |
Q |
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|||||| ||||| || || | |||||||||||| ||||||||||| || |||||||| || |||||| ||||||||| || |||| |||||||||||| |
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| T |
36199650 |
tttgtgtttcaatgttttcaagagatgaatttcacagtaaagcctttcaagatcttcaggactttgtaagaaatcatacagcttgacctgattccaagca |
36199551 |
T |
|
| Q |
410 |
acttcaatcccttgatactcatcaaatgctctatatctgcatcaat |
455 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
36199550 |
acttcaattccttgatactcatcaaatgctctatatctgaatcaat |
36199505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 450
Target Start/End: Original strand, 47006183 - 47006422
Alignment:
| Q |
211 |
aactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgttt |
310 |
Q |
| |
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|||| ||||||||||||| ||||| || |||| |||||||||||||| || || || || | | |||||||||| ||||| || || ||||| || || |
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| T |
47006183 |
aactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttcatgatattc |
47006282 |
T |
|
| Q |
311 |
ttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttcggggttttgtaggaaatcatatagtttgatttgattccaagcaa |
410 |
Q |
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||||||||||| |||| || ||||||||||| ||||| | |||||| || ||||| | ||||| | |||||||| || || | ||||||||| || | |
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| T |
47006283 |
ttgtgcttcaatgtctcaagaagatgaatttcacagtataacctctcaaggtcttcagaattttgcaaaaaatcataaagctttacttgattccatgcta |
47006382 |
T |
|
| Q |
411 |
cttcaatcccttgatactcatcaaatgctctatatctgca |
450 |
Q |
| |
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|||| || |||| ||||||||||||||||||| ||||||| |
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| T |
47006383 |
cttctattccttcatactcatcaaatgctctaaatctgca |
47006422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 36199934 - 36199857
Alignment:
| Q |
24 |
aagtccttgcaggatctgtctacaccaatgcttcactgctctaatattaaccctcttgtgctttagcctatacctatt |
101 |
Q |
| |
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||||||| |||||||||| | |||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |
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| T |
36199934 |
aagtcctctcaggatctgtatgcaccaatgcttcactgctcttatgttaactctcttgtgcttcagcctatacctatt |
36199857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 34451657 - 34451602
Alignment:
| Q |
275 |
gtatcaacccaagaagtataaaatttcataatgtttttgtgcttcaacgtcttgag |
330 |
Q |
| |
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||||||||||| ||| |||||||||| ||||| || ||||||||||| |||||||| |
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| T |
34451657 |
gtatcaacccatgaattataaaatttaataatattcttgtgcttcaaagtcttgag |
34451602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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