View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17442_low_1 (Length: 1026)
Name: NF17442_low_1
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 643 - 1016
Target Start/End: Original strand, 35791195 - 35791563
Alignment:
| Q |
643 |
tattgaacctacattaataagaagatattagtagtagtatattgcattgacaatgcataggatctcaagagtaaaataacataacgctttggtaggccgt |
742 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791195 |
tattgaacctacattaataaga------tattagtagtatattgcattgacaatgcataggatctcaagagtaaaataacataacgctttggtaggccgt |
35791288 |
T |
|
| Q |
743 |
gagcaaaa-actctttattcgttatcttgaaatacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacgggg |
841 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791289 |
gagcaaaaaactctttattcgttatcttggaatacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacgggg |
35791388 |
T |
|
| Q |
842 |
tcacataacatgtacccaatatgattagttattcgagttattattattttgtagaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtga |
941 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791389 |
tcacataacatgtacccaatatgattagttattcgaattattattattttgtagaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtga |
35791488 |
T |
|
| Q |
942 |
gttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaaatgtaagcccttgatattcttc |
1016 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791489 |
gttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaaatgtaagcccttgatattcttc |
35791563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 35790584 - 35790775
Alignment:
| Q |
19 |
gttcattcctttcttttgccatcaaatggggatatgaaagtatataagttaccttttcgtttggcctcgattttaaggtaatgtcccttagtgacaaact |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35790584 |
gttcattcctttcttttgccatcaaatggg-atatgaaagtatataagttaccttttcgtttggcctcgattttaaggtaatgtcccttagcgacaaact |
35790682 |
T |
|
| Q |
119 |
gtttatcattgaggaaagtataccattccaaggaaagatggattaacaaaagttcaaggtgttggagtaatacttaaaccctcctagttagtt |
211 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35790683 |
gtttatcattgaggaaagtataccattgcaaagaaagatggattaacaaaagttcaaggtgttggagtaatacttaaaccctcctagttagtt |
35790775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 407 - 722
Target Start/End: Original strand, 35780683 - 35781013
Alignment:
| Q |
407 |
tatttgtcaaacaacatatatttcatataa-tacgtgttcatggacacgtttgtttgtattttattccagcaggt------------------ttagatg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
35780683 |
tatttgtcaaacaacatatatttcatataaatacgtgttcatggacacgtttgtttctattttattccagcaggttttgaaggccgtcatgtgttagatg |
35780782 |
T |
|
| Q |
488 |
tgtattccctaccttaaattgtgttactctttatgtataannnnnnnnnacattccattactcaattttggtatagtatattatagattcacattgtctt |
587 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35780783 |
tgtattccctaccttaaattgtgttgctctttaagtataattttttttgacattccattactcaattttggtatagtat-------attcacattgtctt |
35780875 |
T |
|
| Q |
588 |
cttaagcattattgatatcttttccttatttttgccaat---------tttatgtgaaatgacatattgaacctacattaataagaagatattagtagta |
678 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || || |
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| T |
35780876 |
cttaaacattattgatatctttttcttatttttgccaatttttgcaagtttatgtgaaatgacatattgaacctacattaataaga------tattacta |
35780969 |
T |
|
| Q |
679 |
gtatattgcattgacaatgcataggatctcaagagtaaaataac |
722 |
Q |
| |
|
|||||||||||| |||||| ||||||| | |||||||||||||| |
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|
| T |
35780970 |
gtatattgcattcacaatggataggatatgaagagtaaaataac |
35781013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 35790873 - 35791008
Alignment:
| Q |
200 |
tcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatct |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35790873 |
tcctagttagttttaatggtcaatttgaaattcaaatgtaaatctctgagtcataaatatgtgcaaactataacttttctctcttcatttgtatctatct |
35790972 |
T |
|
| Q |
300 |
atctatacctttgaattagaaaatttaatgaattga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
35790973 |
atctatacctttgaattagaaaatttaatgaattga |
35791008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 404 - 520
Target Start/End: Original strand, 35791077 - 35791193
Alignment:
| Q |
404 |
tcgtatttgtcaaacaacatatatttcatataatacgtgttcatggacacgtttgtttgtattttattccagcaggtttagatgtgtattccctacctta |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35791077 |
tcgtatttgtcaaacaacatatatttcatataatatgtgttcatggacacgtttgtttgtattttattccagcaggtttagatgtgtattccctacctta |
35791176 |
T |
|
| Q |
504 |
aattgtgttactcttta |
520 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
35791177 |
aattgtgttactcttta |
35791193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 754 - 904
Target Start/End: Original strand, 35782045 - 35782191
Alignment:
| Q |
754 |
ctttattcgttatcttgaaatacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacggggtcacataacatg |
853 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35782045 |
ctttattcgttatcttgtaatacttgccatatt-gacatgatcagactattagttattgctatgtaatagcaaaattttcatatggggtcacataacatg |
35782143 |
T |
|
| Q |
854 |
tacccaatatgattagttattcgagttattattattttgtagaaggaggtg |
904 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
35782144 |
tactcaatatgattagttattcga---attattattttgtagaaggaggtg |
35782191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 35779103 - 35779233
Alignment:
| Q |
199 |
ctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatc |
298 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
35779103 |
ctcctagttagttttaatggtcaatttgaaattcaaatgtaaa--tctgagtcatagatatgtgcaaacta---cttttctctcttcatttgta-ctatc |
35779196 |
T |
|
| Q |
299 |
tatctatacctttgaattagaaaatttaatgaattga |
335 |
Q |
| |
|
||| |||||||| || ||||||||||||||||||||| |
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|
| T |
35779197 |
tatttataccttcgatttagaaaatttaatgaattga |
35779233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 919 - 1016
Target Start/End: Original strand, 35782183 - 35782280
Alignment:
| Q |
919 |
aaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaaatgtaagcccttgatattcttc |
1016 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
35782183 |
aaggaggtgaaaaacacaagtgagttgcttggtttgaaacatggaactgcatgacctgctcctctaaatgttgcaaacgtaagcctttggtattcttc |
35782280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 35784772 - 35784890
Alignment:
| Q |
57 |
agtatataagttaccttttcgtttggcctcgattttaaggtaatg---tcccttagtgacaaactgtttatcattgaggaaagtataccattccaaggaa |
153 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||| |||||| |||||| || |||||||||||||||| ||||| |||| ||||||| |
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|
| T |
35784772 |
agtatataagttacctttttgcttggcctcgaatttaaggtaatgatgtcccttggtgacagaccgtttatcattgaggaaggtataacattgcaaggaa |
35784871 |
T |
|
| Q |
154 |
agatggattaacaaaagtt |
172 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
35784872 |
agatggatttacaaaagtt |
35784890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 35778329 - 35778451
Alignment:
| Q |
57 |
agtatataagttaccttttcgtttggcctcgattttaaggtaatg---tcccttagtgacaaactgtttatcattgaggaaagtataccattccaaggaa |
153 |
Q |
| |
|
||||||||| ||||||||| | |||||||||| ||||| |||||| || ||| |||||| ||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
35778329 |
agtatataaattacctttttgcttggcctcgaatttaaagtaatgatgtctcttggtgacagactgtttatcattgaggaaggtataacattgcaaggaa |
35778428 |
T |
|
| Q |
154 |
agatggattaacaaaagttcaag |
176 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
35778429 |
agatggactaacaaaagttcaag |
35778451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 904
Target Start/End: Original strand, 35784976 - 35785071
Alignment:
| Q |
803 |
ttagctattgctatgtaatagcaaaattttcatacggggtcacataacatgtacccaatatgattagttattcgagttattattattttgtagaaggagg |
902 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| ||||||||| ||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
35784976 |
ttagctattggtatgtaatagctaaattttcatatcgagtcacgtaacatgtatccaatataattaattattcga------attattttgtagaaggagg |
35785069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 895 - 1015
Target Start/End: Complemental strand, 3335090 - 3334970
Alignment:
| Q |
895 |
gaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaa |
994 |
Q |
| |
|
||||| |||| ||||||| | ||||||| |||||| || |||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||| |||| |
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|
| T |
3335090 |
gaaggtggtgattctccaagaagaaaggtggtgaagaatttaagtgaattgcttggtttaaaacagggcactgcatgaccagctcctctaaatgtagcaa |
3334991 |
T |
|
| Q |
995 |
atgtaagcccttgatattctt |
1015 |
Q |
| |
|
| ||||| |||| |||||||| |
|
|
| T |
3334990 |
acgtaagtccttcatattctt |
3334970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 49781953 - 49781890
Alignment:
| Q |
198 |
cctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgc |
263 |
Q |
| |
|
|||||||||||||| | || ||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
49781953 |
cctcctagttagttatgttgatcaatttgaaattcaaatgtaaatctc--agtcataaataagtgc |
49781890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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