View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_10 (Length: 352)
Name: NF17442_low_10
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 37187255 - 37186914
Alignment:
| Q |
1 |
tcaaatggtaggagaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaag |
100 |
Q |
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| T |
37187255 |
tcaactggtaggagaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaag |
37187156 |
T |
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| Q |
101 |
gttcataattcagtcatggcttccttattttacacatacgtccgatcatatattaccatcttaccatatcatactattacttatcaaaaattgtttacaa |
200 |
Q |
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| T |
37187155 |
gttcataattcagtcatggcttccttattttacacatgcgtccgatcatatattaccatcttaccaaatcatactattacttatcgaaaattgtttacaa |
37187056 |
T |
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| Q |
201 |
tgtgtgataagatcgtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37187055 |
tgtgtgataagatcgtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcatta |
37186956 |
T |
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| Q |
301 |
tattcttgtgcacactttataaactattggccatgatctctg |
342 |
Q |
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| T |
37186955 |
tattcttgtgcacactttataaactattggccatgatctctg |
37186914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 17123937 - 17124035
Alignment:
| Q |
12 |
gagaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataatt |
110 |
Q |
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| T |
17123937 |
gagaaagtaccttatggtcgtaggtattaatactgcctttagcagcaggaaaagaagggactcggttcgagctacctggttgccacaaggttcataatt |
17124035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 3724173 - 3724099
Alignment:
| Q |
28 |
gttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggt |
102 |
Q |
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|||||||| ||||| || |||||||| ||||| ||| ||||||| || ||||| | |||||||||||||||||| |
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| T |
3724173 |
gttatagggatcaatacagcttttagtagcaggaaacgaagagattctgttcgaggaacttggatgccacaaggt |
3724099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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