View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17442_low_13 (Length: 308)

Name: NF17442_low_13
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17442_low_13
NF17442_low_13
[»] chr2 (15 HSPs)
chr2 (1-293)||(8578927-8579219)
chr2 (19-170)||(8577842-8577993)
chr2 (107-170)||(12018422-12018485)
chr2 (107-169)||(12005658-12005720)
chr2 (106-162)||(10336379-10336435)
chr2 (106-162)||(10372405-10372461)
chr2 (107-161)||(11987021-11987075)
chr2 (110-159)||(9365193-9365242)
chr2 (107-162)||(12012086-12012141)
chr2 (119-167)||(14550910-14550958)
chr2 (108-162)||(8573037-8573091)
chr2 (65-162)||(7612491-7612588)
chr2 (117-162)||(9275065-9275110)
chr2 (107-155)||(9316579-9316627)
chr2 (107-155)||(9329150-9329198)
[»] chr8 (1 HSPs)
chr8 (106-169)||(41966253-41966316)
[»] chr1 (4 HSPs)
chr1 (109-167)||(29467326-29467384)
chr1 (105-169)||(29423802-29423866)
chr1 (109-153)||(29442860-29442904)
chr1 (109-143)||(29452852-29452886)
[»] scaffold0667 (1 HSPs)
scaffold0667 (107-162)||(5021-5076)
[»] chr4 (1 HSPs)
chr4 (64-143)||(561787-561866)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8578927 - 8579219
Alignment:
Q  1 ccactttaaattctccgttcctttaaacatcaatttatttaaccctaatattgatcttctcggtggttcatgtaacggcctcctttgcatctctaacggt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578927 ccacgttaaattctccgttcctttaaacatcaatttatttaaccctaatattgatcttctcggtggttcatgtaacggcctcctttgcatctctaacggt 8579026  T
Q  101 gttagtgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattcctcctaatgaatctgacttccgcttgtccaaat 200  Q
    || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8579027 gtcagtgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccccattcctcgtaatgaatctgacttccgcttgtccaaat 8579126  T
Q  201 gcgtacacggttttggttttgatcagtctgcccgcaattacaaactcgtgagagtctccttcttcgaagggatacgacacatcatgttcaaaa 293  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8579127 gcgtacacggttttggttttgatcagtctgcctgcaattacaaactcgtgagagtctcctttttcgaagggatacgacacatcatgttcaaaa 8579219  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 8577842 - 8577993
Alignment:
Q  19 tcctttaaacatcaatttatttaaccctaatattgatcttctcggtggttcatgtaacggcctcctttgcatctctaacggtgttagtgaaatcgcattc 118  Q
    ||||||| ||||||||||||  |||||||| ||||||||||| |||||||||||||| || ||||| || ||||   | ||||| |||||||| || ||     
T  8577842 tcctttagacatcaatttatggaaccctaaaattgatcttcttggtggttcatgtaatggtctcctctggatcttcgatggtgtcagtgaaattgcttta 8577941  T
Q  119 tggaaccctaacatccgtaaacatcgggttatcccttatctccccattcctc 170  Q
    ||||| ||||||||||||||||||||| |||| || ||| || |||||||||    
T  8577942 tggaatcctaacatccgtaaacatcggtttataccatatgtctccattcctc 8577993  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 12018422 - 12018485
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattcctc 170  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||    
T  12018422 gaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctattcctc 12018485  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 12005658 - 12005720
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattcct 169  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcct 12005720  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 10336435 - 10336379
Alignment:
Q  106 tgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    ||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||    
T  10336435 tgaaatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccc 10336379  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 10372461 - 10372405
Alignment:
Q  106 tgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  10372461 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 10372405  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 11987021 - 11987075
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctcc 161  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||||| ||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc 11987075  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 9365242 - 9365193
Alignment:
Q  110 atcgcattctggaaccctaacatccgtaaacatcgggttatcccttatct 159  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatcccttatct 9365193  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 12012086 - 12012141
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    |||| ||| |||||||||||||||||||||||||||| | |||||||| |||||||    
T  12012086 gaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccc 12012141  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 14550958 - 14550910
Alignment:
Q  119 tggaaccctaacatccgtaaacatcgggttatcccttatctccccattc 167  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  14550958 tggaaccctaacatccgtaaacatcgcattatccctgatctccctattc 14550910  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 8573037 - 8573091
Alignment:
Q  108 aaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    |||||||| ||||||||||||||| |||||||||||   ||||||||| ||||||    
T  8573037 aaatcgcaatctggaaccctaacacccgtaaacatcacattatcccttttctccc 8573091  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 7612588 - 7612491
Alignment:
Q  65 ggttcatgtaacggcctcctttgcatctctaacggtgttagtgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    ||||||||||||||  |||| |||||||| ||| || |    || ||||| || |||||||||||||||||||||||| |||  |||||| |||||||    
T  7612588 ggttcatgtaacggtatcctctgcatctccaaccgtttctacgatatcgctttatggaaccctaacatccgtaaacatagggccatccctaatctccc 7612491  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 9275110 - 9275065
Alignment:
Q  117 tctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    ||||||||||||||| | ||||||||||| ||||||||| ||||||    
T  9275110 tctggaaccctaacaccggtaaacatcggattatcccttttctccc 9275065  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 9316627 - 9316579
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatccctt 155  Q
    |||||| || ||||||||||||||| ||||||||||||  |||||||||    
T  9316627 gaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctt 9316579  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 9329198 - 9329150
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatccctt 155  Q
    |||||| || ||||||||||||||| ||||||||||||  |||||||||    
T  9329198 gaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctt 9329150  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 41966253 - 41966316
Alignment:
Q  106 tgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattcct 169  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  41966253 tgaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcct 41966316  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 29467326 - 29467384
Alignment:
Q  109 aatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattc 167  Q
    |||||| |||||||| ||||||||||||||||||||| |||| ||| ||||||| ||||    
T  29467326 aatcgctttctggaatcctaacatccgtaaacatcggattattcctaatctccctattc 29467384  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 29423866 - 29423802
Alignment:
Q  105 gtgaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccccattcct 169  Q
    |||||||||| ||||||||||||| |||| ||||||||||  |||||||||  ||||| ||||||    
T  29423866 gtgaaatcgctttctggaaccctaccatctgtaaacatcgcattatcccttccctccctattcct 29423802  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 29442860 - 29442904
Alignment:
Q  109 aatcgcattctggaaccctaacatccgtaaacatcgggttatccc 153  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||    
T  29442860 aatcgctttctggaaccctaacatccgtaaacaccggattatccc 29442904  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 29452852 - 29452886
Alignment:
Q  109 aatcgcattctggaaccctaacatccgtaaacatc 143  Q
    |||||| ||||||||||||||||||||||||||||    
T  29452852 aatcgctttctggaaccctaacatccgtaaacatc 29452886  T

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Target: scaffold0667 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 5076 - 5021
Alignment:
Q  107 gaaatcgcattctggaaccctaacatccgtaaacatcgggttatcccttatctccc 162  Q
    |||||| || |||||||||||||||||||||||||||   ||||||||| ||||||    
T  5076 gaaatcacaatctggaaccctaacatccgtaaacatcacattatcccttttctccc 5021  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 561866 - 561787
Alignment:
Q  64 tggttcatgtaacggcctcctttgcatctctaacggtgttagtgaaatcgcattctggaaccctaacatccgtaaacatc 143  Q
    |||||||||||| ||||| ||||||||||| |||   ||    ||||| || ||||||||||||||||||||||||||||    
T  561866 tggttcatgtaatggccttctttgcatctccaaccaagtagacgaaattgctttctggaaccctaacatccgtaaacatc 561787  T

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