View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_2 (Length: 860)
Name: NF17442_low_2
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_2 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 245 - 520
Target Start/End: Original strand, 28935191 - 28935460
Alignment:
| Q |
245 |
ctttcttgatttacactatagcatatcatcagtgtaaatttgacatggaatgtatgttatcgttgatgaaatgtgttcctggtaaagttaaggtgtgcag |
344 |
Q |
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| T |
28935191 |
ctttcttgatttacactatagcatatcatcaatgtaaatttgacatggaatgtatgtt------gatgaaatgtgttcctggtaaagttaatgtgtgcag |
28935284 |
T |
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| Q |
345 |
tttgggaaggtgttattgcgtcaacagttaagttaaaaaatatttatgtgttgcacctaagcctatacttttattttttccatcataatgttgttcattt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935285 |
tttgggaaggtgttattgcgtcaacagttaagttaaaaaataattatgcgttgcacctaagcctatacttttattttttccatcataatgttgttcattt |
28935384 |
T |
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| Q |
445 |
ctataacactttagtgtgtgtgtattctacctttcaatattttcgttgccttagaaatgtgttaatcatattatgc |
520 |
Q |
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| T |
28935385 |
ctataacactatagtgtgtgtgtattctacctttcaatattttcattggcttagaaatgtgttaatcatattatgc |
28935460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 536 - 771
Target Start/End: Original strand, 28935509 - 28935745
Alignment:
| Q |
536 |
taaatatgatctagttttttaatacactatctatgaatcttagaattgtggtccaaaccttaggagagtattgtctaagtttgatatttgcttgcatata |
635 |
Q |
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| T |
28935509 |
taaatatgatctagttttttaatacactatctatgaatcttagaattgtggtccaaaccttaggagagtatcgtctaagtttgatatttgcttgcatata |
28935608 |
T |
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| Q |
636 |
tacagagagcatgtatcaaatgagatgagtgattattctgagcgatgagaagattcaatttcaatcctcggatgaatattaat-ggttcaaattaattat |
734 |
Q |
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| T |
28935609 |
tatagagaacatgtatcaaataagaggagtggttattgtgagcgatgagaggattcaatttcaatccttagatgaatattaatgggttcaaattaattat |
28935708 |
T |
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| Q |
735 |
tgttaaaatactctcttccttcttgtcatgcgcacta |
771 |
Q |
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| T |
28935709 |
tgttaaaatactctattccttcttgtcatgcgcacta |
28935745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 28934964 - 28935167
Alignment:
| Q |
19 |
cagaattgtgtccactataaagtgatcaaaaaagtgttatattcattgcatgcaaatgatgaaaaatacgactaaagttatcaaatttgtgtatattatg |
118 |
Q |
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| T |
28934964 |
cagaattgtgtccactataaagtgatcaaaaaagtgttatattcattgcattcaaatgatgaaaaatatgactaaagctatcaaatttgtgtatattatg |
28935063 |
T |
|
| Q |
119 |
atcttatttcttcccccaattcttgttggagctggcgaaattcataagttatttttcacactctttnnnnnnnnnngttgcctaatacacaatctttcat |
218 |
Q |
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| T |
28935064 |
atcttatttcttcccccaattcttgttggagctggcgaaattcgtaagttatttttcacactctttaaaaaaaaaagttacctaatacacaatctttcat |
28935163 |
T |
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| Q |
219 |
tccc |
222 |
Q |
| |
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|||| |
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| T |
28935164 |
tccc |
28935167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 771
Target Start/End: Complemental strand, 14929 - 14863
Alignment:
| Q |
705 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttcttgtcatgcgcacta |
771 |
Q |
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| T |
14929 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttctagttatgtgcacta |
14863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 771
Target Start/End: Original strand, 54999877 - 54999943
Alignment:
| Q |
705 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttcttgtcatgcgcacta |
771 |
Q |
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| T |
54999877 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttctagttatgtgcacta |
54999943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 771
Target Start/End: Complemental strand, 45060519 - 45060453
Alignment:
| Q |
705 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttcttgtcatgcgcacta |
771 |
Q |
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| T |
45060519 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttctagttatgtgcacta |
45060453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 771
Target Start/End: Original strand, 45081549 - 45081615
Alignment:
| Q |
705 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttcttgtcatgcgcacta |
771 |
Q |
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| T |
45081549 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttctagttatgtgcacta |
45081615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 682 - 749
Target Start/End: Complemental strand, 6412747 - 6412680
Alignment:
| Q |
682 |
gagaagattcaatttcaatcctcggatgaatattaatggttcaaattaattattgttaaaatactctc |
749 |
Q |
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| T |
6412747 |
gagaggattcaatcttaacccttggatgaatattaatggttcaaattaattactgttaaagtactctc |
6412680 |
T |
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