View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_21 (Length: 275)
Name: NF17442_low_21
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4245996 - 4246263
Alignment:
| Q |
1 |
gtccttaatgatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcg |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
4245996 |
gtccttaatgatgctgaacagaaacaactcaaagactctgctgttaacaactagtttgatgacctcaaagatgctccctatatagctgacgaccttctcg |
4246095 |
T |
|
| Q |
101 |
atcacatctctactaaagtttctatttccaagaacaaggagaagcaggtgagtagtactaactacttctctcgctttttcaactttgaagatagggatat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246096 |
atcatatctctactaaagtttctatttccaagaacaaggagaagcatgtgagtagtactaactacttctctcgctttttcaactttgaagatagggatat |
4246195 |
T |
|
| Q |
201 |
ggtttgtaagttggaag----atatagttgctaggcttgaatacattctcaaattcaaagatattctt |
264 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246196 |
ggtttttaagttggaagatatatatagttgctaggcttgaatacattctcaaattcaaagatattctt |
4246263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 4315377 - 4315120
Alignment:
| Q |
4 |
cttaatgatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcgatc |
103 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| | ||| | ||||| || | |||||| | |
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| T |
4315377 |
cttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcaaagatgctgtttattttgctgatgatcttctcgacc |
4315278 |
T |
|
| Q |
104 |
acatctctactaaagtttctatttccaagaacaaggagaagcaggtgagtagtact---aactacttctctcgctttttcaactttgaagatagggatat |
200 |
Q |
| |
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|||| ||||| |||| | ||| | ||||||||| |||||||| | || |||||||||||| ||||||||||||||||||| ||||||| |
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| T |
4315277 |
acatttctaccaaagctgctactcagaagaacaag------caggtgagcaccgctgttaactacttctctagctttttcaactttgaagaacgggatat |
4315184 |
T |
|
| Q |
201 |
ggtttgtaagttggaagatatagttgctaggcttgaatacattctcaaattcaaagatattctt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4315183 |
ggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattctt |
4315120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 4306509 - 4306261
Alignment:
| Q |
10 |
gatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcgatcacatct |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||| | ||| | |||| || | |||||| ||||||| |
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| T |
4306509 |
gatgctgaacagaaacagctcaaagactctgctgttatcaaatggcttgatgatctcaaagatgctgtttattttactgatgatcttctcgaccacatct |
4306410 |
T |
|
| Q |
110 |
ctactaaagtttctatttccaagaacaaggagaagcaggtgagtagtactaactacttctctcgctttttcaactttgaagatagggatatggtttgtaa |
209 |
Q |
| |
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|||| |||| | | ||| ||| | || || |||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||| | |
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| T |
4306409 |
ctaccaaagctgcaattgggaaggaaaac---aaagaggtgagtgttgttaactacttctctcgctttttcaactttgaagaaagagatatggtttgtga |
4306313 |
T |
|
| Q |
210 |
gttggaagatatagttgctaggcttgaatacattctcaaattcaaagatatt |
261 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4306312 |
gttggtagatatagttgctagacttgaatacattctcaaattcaaagatatt |
4306261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 4309378 - 4309139
Alignment:
| Q |
19 |
cagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcgatcacatctctactaaag |
118 |
Q |
| |
|
|||||||| |||||||||||||| |||| || ||||| ||||| |||||||| ||| ||||| | ||||| |||| | |||| ||||| | ||| |||| |
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| T |
4309378 |
cagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaag |
4309279 |
T |
|
| Q |
119 |
tttctatttccaagaacaaggagaagcaggtgagtagtactaactacttctctcgctttttcaactttgaagatagggatatggtttgtaagttggaaga |
218 |
Q |
| |
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| ||| | |||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
4309278 |
ctgctactcggaagaacaaggag------gtgagtactactaactacttctctccatttttcaattttgaagaaagggatatggtttataagttggaaga |
4309185 |
T |
|
| Q |
219 |
tatagttgctaggcttgaatacattctcaaattcaaagatattctt |
264 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||| |||||||| |
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| T |
4309184 |
catagttgctagacttgaatacattctgaaaatcaataatattctt |
4309139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 4253255 - 4253377
Alignment:
| Q |
142 |
aagcaggtgagtagtactaactacttctctcgctttttcaactttgaagatagggatatggtttgtaagttggaagatatagttgctaggcttgaataca |
241 |
Q |
| |
|
||||||||||||| | |||| || || ||||||||||||||||||||||| ||||| ||| |||||||| ||||| |||||||||||| ||||||| || |
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| T |
4253255 |
aagcaggtgagtactgctaattatttatctcgctttttcaactttgaagaaagggacatgctttgtaagctggaaaatatagttgctaaacttgaatcca |
4253354 |
T |
|
| Q |
242 |
ttctcaaattcaaagatattctt |
264 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
4253355 |
ttctcaaattcaaagatattctt |
4253377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 41932546 - 41932809
Alignment:
| Q |
7 |
aatgatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcgatcaca |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| | ||||| ||| | | ||||||| |
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|
| T |
41932546 |
aatgatgctgaacagaaacagttcaaagactctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatgacattttggatcaca |
41932645 |
T |
|
| Q |
107 |
tctctactaaagtttct---atttcc---aagaacaaggagaagcaggtgagtagtactaactacttctctcgctttttcaactttgaagatagggatat |
200 |
Q |
| |
|
|||||||||||| | || | ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
41932646 |
tctctactaaagctgctgctacttcttggaagaacaaggagaagcaggtgagtactcttaactacttctctcgctttttcaactttgaagaaagagatat |
41932745 |
T |
|
| Q |
201 |
ggtttgtaagttggaagatatagttgctaggcttgaatacattctcaaattcaaagatattctt |
264 |
Q |
| |
|
| |||||||||||||| |||| | ||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
41932746 |
gttttgtaagttggaaaatatcgccgctagacttgaatccattctcaaattcaaagatattctt |
41932809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 34803247 - 34803146
Alignment:
| Q |
163 |
tacttctctcgctttttcaactttgaagatagggatatggtttgtaagttggaagatatagttgctaggcttgaatacattctcaaattcaaagatattc |
262 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||||||||| |||||| ||| | |||| | |||| |||||||||||||| |||||||||||||||| |
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|
| T |
34803247 |
tacttctatcgccttttcaactttgaagaaagggatatggtttttaagttagaaaacatagcttctagacttgaatacattctaaaattcaaagatattc |
34803148 |
T |
|
| Q |
263 |
tt |
264 |
Q |
| |
|
|| |
|
|
| T |
34803147 |
tt |
34803146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 34803389 - 34803279
Alignment:
| Q |
8 |
atgatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctgacgaccctctcgatcacat |
107 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||| |||| | | |||||||| |
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|
| T |
34803389 |
atgatgcggaatagaaacagatcaaagactctgctgttaacaactggctcgatgacctcaaagacgctgtttatgtagctgatgaccttttggatcacat |
34803290 |
T |
|
| Q |
108 |
ctctactaaag |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
34803289 |
ttctactaaag |
34803279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 6060785 - 6060700
Alignment:
| Q |
4 |
cttaatgatgctgaacagaaacaagtcaaagactctgctgttaacaactggcttgatgacctcaaagatgctctctatatagctga |
89 |
Q |
| |
|
|||||||||||||| |||||||| || || |||| ||| ||||||||||| |||| |||||||||||| ||||| ||||||| |
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|
| T |
6060785 |
cttaatgatgctgagaagaaacaaaccagggattctgatgtcaacaactggctcaatgatctcaaagatgctgtctatgtagctga |
6060700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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