View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_22 (Length: 274)
Name: NF17442_low_22
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 43282786 - 43282523
Alignment:
| Q |
1 |
tctgtctatctaattatatatattttttggtagattagtttaatttcgattctcttagtaggtaaggatgaaatttgaaatggttgcaacctttattcta |
100 |
Q |
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| T |
43282786 |
tctgtctatctaattatatatattttttggtagattagtttaatttcgattctctt-gtaggtaaggatgaaatttgaaatggttgcagcctttattcta |
43282688 |
T |
|
| Q |
101 |
tatgatgcagaaatctatgtaagcatatattttttgtttgactctttaccttgttgtgttatatatatccatatactcatttaatacttgattgattgag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43282687 |
tatgatgcagaaatctatgtaagcatatattttttgtttgactctttacctagttgtgttatatatatccatatactcatttaatgcttgattgattgag |
43282588 |
T |
|
| Q |
201 |
aaaatggttatgattttgaacagttgtgtgttaattcaacatttttgaagccatctttgaatatt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43282587 |
aaaatggttatgattttgaacagttgtgtgttaattcaacatttttgaagccatctttgaatatt |
43282523 |
T |
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