View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17442_low_25 (Length: 251)

Name: NF17442_low_25
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17442_low_25
NF17442_low_25
[»] chr7 (15 HSPs)
chr7 (14-234)||(31618378-31618598)
chr7 (14-234)||(31576108-31576328)
chr7 (14-234)||(31604774-31604994)
chr7 (14-234)||(31585518-31585738)
chr7 (14-217)||(31608368-31608571)
chr7 (14-234)||(31614649-31614862)
chr7 (14-234)||(31595165-31595385)
chr7 (24-223)||(31572752-31572950)
chr7 (14-229)||(31541130-31541345)
chr7 (18-183)||(33305100-33305265)
chr7 (30-223)||(31438928-31439121)
chr7 (136-229)||(31532595-31532688)
chr7 (76-228)||(21898190-21898342)
chr7 (57-119)||(31574130-31574192)
chr7 (14-91)||(31532507-31532584)
[»] chr1 (6 HSPs)
chr1 (14-234)||(52174211-52174431)
chr1 (36-123)||(49710778-49710865)
chr1 (36-124)||(49215439-49215527)
chr1 (42-124)||(49683167-49683249)
chr1 (13-46)||(9488637-9488670)
chr1 (88-169)||(11011052-11011133)
[»] chr4 (3 HSPs)
chr4 (24-229)||(15063269-15063474)
chr4 (57-159)||(29083995-29084098)
chr4 (85-193)||(29084120-29084228)
[»] scaffold0394 (1 HSPs)
scaffold0394 (24-141)||(2060-2177)
[»] chr6 (10 HSPs)
chr6 (93-171)||(30955224-30955302)
chr6 (93-202)||(31189597-31189706)
chr6 (93-165)||(30960975-30961047)
chr6 (93-165)||(30992457-30992529)
chr6 (93-171)||(30944964-30945042)
chr6 (93-202)||(31145539-31145648)
chr6 (93-202)||(31171852-31171961)
chr6 (93-165)||(31214211-31214283)
chr6 (93-154)||(31201404-31201465)
chr6 (93-202)||(31224443-31224552)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31618378 - 31618598
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31618378 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 31618477  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31618478 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 31618577  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||||||| ||| ||||||    
T  31618578 tgccaattgcaattcgaaaca 31618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31576108 - 31576328
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  31576108 ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt 31576207  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  31576208 gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa 31576307  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||||||| ||||| ||||    
T  31576308 tgccaattgctatttggaaca 31576328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31604774 - 31604994
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  31604774 ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt 31604873  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  31604874 gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa 31604973  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||||||| ||||| ||||    
T  31604974 tgccaattgctatttggaaca 31604994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31585518 - 31585738
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||| || |||||||||| |||||||||||||| || ||||||    
T  31585518 ttctggtgccatatatcctatagttcctcttgcccctagcattgacacagtactatccttctttcggcatatttttgctagtccaaaatcagatattttt 31585617  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||    
T  31585618 ggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaagatgcagaatcctcgaactacatccttgatgcaaatactctaaacctctagcaa 31585717  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||| ||| ||||| ||||    
T  31585718 tgccaactgcaatttggaaca 31585738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 31608368 - 31608571
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||| ||||| |||||||||||||||| || ||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||    
T  31608368 ttctggcgccatatatcctatagttcctcgtgtccccaatattgacacaatactgtccttcctttgacatattttagcaagtccaaaatcagatattttt 31608467  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  31608468 ggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgtagtatccttgaactacatccttgatgcaagtactcgagacctctagcaa 31608567  T
Q  214 tgcc 217  Q
    ||||    
T  31608568 tgcc 31608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31614649 - 31614862
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  31614649 ttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt 31614748  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || |||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||| |||       |||||||||||||||||||| |||| |    
T  31614749 gggcaaaaatcttcatccaaaagaatgttttgaggtttggtatcaagatacagaatccttgagcta-------gatgcaagtactctagacctctagcga 31614841  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||||||| ||||| ||||    
T  31614842 tgccaattgcaatttggaaca 31614862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31595165 - 31595385
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||| ||||| ||||||||||||||||||| |||   |||||||||||||||||| ||| |||| |||||||| |||||||||||||| |||||||||    
T  31595165 ttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatttttgctagtccaaaatcagagattttt 31595264  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || ||||| | ||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||    
T  31595265 gggcaaaagttttcgtccaaaagaatgttttgaggtttgatatcaagatgcagtatccttgaactacatccttgatgcaagtactctaaacctctagcaa 31595364  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||| || || ||||| ||||    
T  31595365 tgccgatagcaatttggaaca 31595385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 31572950 - 31572752
Alignment:
Q  24 atgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaat 123  Q
    ||||||||||||||||| ||||  || | ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  31572950 atgtatcctatagttccccttgtgccaagtatggacacaatactatccttcctttggcatatttgagctagtccaaaatcagagatttttgggcaaaaat 31572851  T
Q  124 cttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaatgccaattgc 223  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| |||||||| || || ||| |||| ||||| |||||    
T  31572850 cttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatccttgaaatacatccttgttgcaagtattcgagtcctctagctatgcctattgc 31572752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 31541130 - 31541345
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    ||||||||| || |||||||||||||||||||  || | ||  |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||     
T  31541130 ttctggtgctatatatcctatagttcctcttgtgccaagtaaagacacaatactatcattcctttggcatactttagctagtccaaaatcagagattttg 31541229  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || ||||||| ||||||||||||||||||||| ||||| ||||||||||| | ||| |||||| ||||||||||||||||||| ||||| |||  |||||    
T  31541230 gggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaattcttgaaatacatccttgatgcaagtattctagtcctcgagcaa 31541329  T
Q  214 tgccaattgcgatttg 229  Q
    | || ||||| |||||    
T  31541330 ttccgattgcaatttg 31541345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 33305265 - 33305100
Alignment:
Q  18 ggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggac 117  Q
    ||||| ||||||||||||||||||||||  || | ||| || ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |    
T  33305265 ggtgctatgtatcctatagttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggc 33305166  T
Q  118 aaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatc 183  Q
    ||||||||| |||||||||||||||||| ||||| | ||||||||| | |||||||||| ||||||    
T  33305165 aaaaatcttaatccaaaagaatgttttggggtttgacatcaagatgcaaaatccttgaaatacatc 33305100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 31439121 - 31438928
Alignment:
Q  30 cctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaatcttcat 129  Q
    ||||||||||||||||  || | ||  || |||| ||| || ||| |||| |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  31439121 cctatagttcctcttgtgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatttttggacaaaaatcttcat 31439022  T
Q  130 ccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaatgccaattgc 223  Q
    | |||||||||||||||||||| ||||||||||| | ||| |||||| |||| |||||||| ||||||||||| ||| ||||||||| ||||||    
T  31439021 ctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaagtactctagtcctctagcaatgctaattgc 31438928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 31532595 - 31532688
Alignment:
Q  136 gaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaatgccaattgcgatttg 229  Q
    |||||||||| ||||| ||||||||||| | |||||||||| ||||||||||||||||||| ||||| |||| ||||||||| ||||| |||||    
T  31532595 gaatgttttgtggtttgatatcaagatgcaaaatccttgaattacatccttgatgcaagtattctagtccttgagcaatgccgattgcaatttg 31532688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 21898342 - 21898190
Alignment:
Q  76 tttggcatattttagctagtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttga 175  Q
    ||||||| ||||| || ||||||||||| | ||||||||| |||||||| |||||||  |||||||| || || || ||||| ||||| | |||||| ||    
T  21898342 tttggcagattttcgccagtccaaaatcagcgatttttgggcaaaaatcatcatccagcagaatgttgtggggcttgatatccagatgcacaatcctcga 21898243  T
Q  176 actacatccttgatgcaagtactctagacctttagcaatgccaattgcgattt 228  Q
    |  |||||||||||||||||| || || || ||||| ||||| ||||| ||||    
T  21898242 agcacatccttgatgcaagtagtccagtcccttagcgatgcctattgcaattt 21898190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 31574130 - 31574192
Alignment:
Q  57 gacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaa 119  Q
    |||||||||||| | || |||| |||||||||| |||||||||||| ||||||||||||||||    
T  31574130 gacacaatactaacattactttagcatattttatctagtccaaaatttgagatttttggacaa 31574192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 31532507 - 31532584
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagc 91  Q
    ||||||||| ||||||||||| ||||||||||  || | ||| ||||||||||| || ||| ||||||||||||||||    
T  31532507 ttctggtgctatgtatcctatggttcctcttgtgccaagtatagacacaatactgtcattcttttggcatattttagc 31532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 52174431 - 52174211
Alignment:
Q  14 ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt 113  Q
    |||||| ||||| |||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  52174431 ttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatcagatattttt 52174332  T
Q  114 ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa 213  Q
    || ||||| ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  52174331 gggcaaaagtcttcatccaaaataatgttttgaggtttgatatcaagatgcaaaatccttgaactacatccttgatgcaagtactctagtcctttagcaa 52174232  T
Q  214 tgccaattgcgatttgaaaca 234  Q
    |||||||||| ||||| ||||    
T  52174231 tgccaattgcaatttggaaca 52174211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 49710865 - 49710778
Alignment:
Q  36 gttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaat 123  Q
    ||||| ||||| || |||||||| ||||| || || || ||| | ||||||||||| |||||||||||||| ||||||||||||||||    
T  49710865 gttccccttgcaccaaatattgatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaat 49710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 49215527 - 49215439
Alignment:
Q  36 gttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaatc 124  Q
    ||||||||||| || ||||  ||  ||||||| || || ||| ||||||||||||| |||||||||||||| ||||| |||||||||||    
T  49215527 gttcctcttgcgccaaatacggatgcaatactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatc 49215439  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 49683249 - 49683167
Alignment:
Q  42 cttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaatc 124  Q
    ||||| || |||||||| ||||| || || || ||| | ||||||||||| |||||||||||||| ||||||||||| |||||    
T  49683249 cttgcaccaaatattgatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatc 49683167  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 9488637 - 9488670
Alignment:
Q  13 attctggtgccatgtatcctatagttcctcttgc 46  Q
    ||||||||||||||||||| ||||||||||||||    
T  9488637 attctggtgccatgtatcccatagttcctcttgc 9488670  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 11011052 - 11011133
Alignment:
Q  88 tagctagtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaat 169  Q
    |||||||||||||||| || | |||||||   |||| |||||| | ||||||||| ||||| ||||||||||  ||||||||    
T  11011052 tagctagtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgtagaat 11011133  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 15063474 - 15063269
Alignment:
Q  24 atgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaat 123  Q
    ||||| |||||||||||||||| ||| |  || ||||||| ||| || ||| |||| ||||||||||| || |||||||| || |||||||| |||||||    
T  15063474 atgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaat 15063375  T
Q  124 cttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaatgccaattgc 223  Q
    ||||||| |||||||||||||||||||| ||||||||||| | ||| |||||| |||| |||||||| || ||||||||||||  ||||||||||||| |    
T  15063374 cttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaaatactctagacctcgagcaatgccaattac 15063275  T
Q  224 gatttg 229  Q
    ||||||    
T  15063274 gatttg 15063269  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 29083995 - 29084098
Alignment:
Q  57 gacacaatactatccttcctttggcatattttagctagtccaaaatctgaga-tttttggacaaaaatcttcatccaaaagaatgttttgaggttttata 155  Q
    |||||||||||||  |||  ||| |||||||||||||||||||||||| ||| ||||| | |||||||| |||||||||||||||||||| ||||| |||    
T  29083995 gacacaatactatgattctcttgacatattttagctagtccaaaatcttagatttttttggcaaaaatcgtcatccaaaagaatgttttggggtttgata 29084094  T
Q  156 tcaa 159  Q
    ||||    
T  29084095 tcaa 29084098  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 29084120 - 29084228
Alignment:
Q  85 ttttagctagtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatcc 184  Q
    |||||| ||||||||||||| |||||||||  |||||||| |||||| ||| | | |  |||||||||||||| | ||| | |||| ||||| |||||||    
T  29084120 ttttagttagtccaaaatcttagatttttgcgcaaaaatcgtcatcccaaaaattatcatgaggttttatatccaaatgcacaatctttgaaatacatcc 29084219  T
Q  185 ttgatgcaa 193  Q
    || ||||||    
T  29084220 ttaatgcaa 29084228  T

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Target: scaffold0394 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 2060 - 2177
Alignment:
Q  24 atgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagatttttggacaaaaat 123  Q
    ||||| |||||||||||||||| ||| |  || ||||||| ||| || ||| |||| ||||||||||| || |||||||| || |||||||| |||||||    
T  2060 atgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaat 2159  T
Q  124 cttcatccaaaagaatgt 141  Q
    ||||||| ||||||||||    
T  2160 cttcatctaaaagaatgt 2177  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 30955302 - 30955224
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 171  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||| |||||    
T  30955302 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 30955224  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 31189597 - 31189706
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgca 192  Q
    |||||||||||||| ||||||||||| ||||  ||||| ||||||||||| || |||||||| || | ||||| ||| ||||   ||||||||  |||||    
T  31189597 agtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgca 31189696  T
Q  193 agtactctag 202  Q
    ||||||||||    
T  31189697 agtactctag 31189706  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 30961047 - 30960975
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgta 165  Q
    ||||||||||||||||| |||||||||||||  ||||| ||||||||||| || |||||||| |||| |||||    
T  30961047 agtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgta 30960975  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 30992529 - 30992457
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgta 165  Q
    ||||||||||||||||| |||||||||||||  ||||| ||||||||||| || |||||||| |||| |||||    
T  30992529 agtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgta 30992457  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 30945042 - 30944964
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 171  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || |||||||| |||| ||||| |||||    
T  30945042 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggttttatgtcaaaatgtaaaatcc 30944964  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 31145539 - 31145648
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgca 192  Q
    |||||||||||||| || |||||||| || | |||||| ||||||||||| || |||||||| |||| ||||| ||| |  |   ||||||||  |||||    
T  31145539 agtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgca 31145638  T
Q  193 agtactctag 202  Q
    ||||||||||    
T  31145639 agtactctag 31145648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 31171852 - 31171961
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgca 192  Q
    |||||||||||||| || |||||||| || | |||||| ||||||||||| || |||||||| |||| ||||| ||| |  |   ||||||||  |||||    
T  31171852 agtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgca 31171951  T
Q  193 agtactctag 202  Q
    ||||||||||    
T  31171952 agtactctag 31171961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 31214283 - 31214211
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgta 165  Q
    |||||||||||||| || ||||||||||||| |||||| || | ||| || || ||||||||||||| |||||    
T  31214283 agtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgta 31214211  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 31201404 - 31201465
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttat 154  Q
    |||||||||||||| || |||||||||||||  ||||| |||||||| || || ||||||||    
T  31201404 agtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttat 31201465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 31224552 - 31224443
Alignment:
Q  93 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgca 192  Q
    |||||||||||||| || || ||||| ||||  ||||| ||||| ||||| || |||||||| |||| ||||| ||| || |   ||||||||  |||||    
T  31224552 agtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgtaaaattctagtggtacatcctccatgca 31224453  T
Q  193 agtactctag 202  Q
    ||||||||||    
T  31224452 agtactctag 31224443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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