View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_27 (Length: 249)
Name: NF17442_low_27
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10296104 - 10295867
Alignment:
| Q |
1 |
ctacaacttgatagtggttcgagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaa |
100 |
Q |
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| T |
10296104 |
ctacaacttgatagtggttcaagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaa |
10296005 |
T |
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| Q |
101 |
ccacaatcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatc |
200 |
Q |
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| T |
10296004 |
ccacaatcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatc |
10295905 |
T |
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| Q |
201 |
cacacaacatatgtcagacgaatatgtaccatgattca |
238 |
Q |
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| T |
10295904 |
cacacaacatatgtcagacgaatatgtaccatgattca |
10295867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 43797011 - 43797157
Alignment:
| Q |
88 |
agactagttccaaccacaatcaccagcttacttccaaacttgactagttccattgattttact---tctccatgttcaagttcaaaagacgccagtactg |
184 |
Q |
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| T |
43797011 |
agactagttccaaccacaagcacctgctcacttccaaccctaattaattccatggatgttgctgtttctccaagttctagtctaaaagacgatagtactg |
43797110 |
T |
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| Q |
185 |
acccacttagtggatccacacaacatatgtcagacgaatatgtacca |
231 |
Q |
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| T |
43797111 |
acccgcttaggggatccacacaacatatgtcagacaaacatgtacca |
43797157 |
T |
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