View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_3 (Length: 544)
Name: NF17442_low_3
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 527
Target Start/End: Original strand, 31770953 - 31771468
Alignment:
| Q |
12 |
atgaactaccttgatgatgaaagaatatcacnnnnnnnatggtgtttttcattagaagaatgacctttgctgccattggcatcagaatgactgttgttac |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770953 |
atgaactaccttgatgatgaaagaatatcactttttttatggtgtttttcattagaagaatgacctttgctgccattggcatcagaatgactgttgttac |
31771052 |
T |
|
| Q |
112 |
tgtattctacaatctggtagttatcttcaggtgataacttctctggaagagaataagcggcgaaatttgtgacatctagtaagcgttgaatgaactcaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31771053 |
tgtattctacaatctggtagttatcttcaggtgataacttctctggaagagaataagcggcgaaatttgtgacatctagtaagcgttgaatgaactcaca |
31771152 |
T |
|
| Q |
212 |
ctgatttatatccatatttgcctgtgaatgatgtaactctagttgaagcnnnnnnnnnnnnnnnnnaagtgcttccgtgaatgaaaagtttggataagaa |
311 |
Q |
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| T |
31771153 |
ctgatttatatccatatttgcctgtgaatgatgtaactctagttgaagcttttcattttcttttttaagtgcctccgtgaatgaaaagtttggataagaa |
31771252 |
T |
|
| Q |
312 |
catgaaagagttttcttcagcactacagtgtcctctttgtcatgttctggtttcataaaaacagtctgcaccttttggtcctcatcatccaatgtgtatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31771253 |
catgaaagagttttcttcagcactacagtgtcctctttgtcatgttctggtttcataaaaacagtctgcaccttttggtcctcatcatccaatgtgtatg |
31771352 |
T |
|
| Q |
412 |
cacattgatccttttcaataacttcaagtctctcctgaatattccagagaagcaagctattattattaccaagaaaactcaatcaaaagtatatcaaagt |
511 |
Q |
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| T |
31771353 |
cacattgatccttttcaataacttcaagtctctcctgaatattccagagaagcaagctattattattaccaagaaaactcaatcaaaagtatatcaaagt |
31771452 |
T |
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| Q |
512 |
ctttgaagacatttgc |
527 |
Q |
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| T |
31771453 |
ctttgaagacatttgc |
31771468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 451
Target Start/End: Complemental strand, 8965266 - 8965121
Alignment:
| Q |
306 |
taagaacatgaaagagttttcttcagcactacagtgtcctctttgtcatgttctggtttcataaaaacagtctgcaccttttggtcctcatcatccaatg |
405 |
Q |
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|||||||| || |||||||||||||||||| |||| ||||| |||||| | || ||||| | || ||| || ||| ||| |||||||||||| || |||| |
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| T |
8965266 |
taagaacaggagagagttttcttcagcactgcagtatcctccttgtcaggatcaggttttaaaataactgtgtgcgcctgttggtcctcatcgtctaatg |
8965167 |
T |
|
| Q |
406 |
tgtatgcacattgatccttttcaataacttcaagtctctcctgaat |
451 |
Q |
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| T |
8965166 |
tgtattcccgctgatcatgttcaataacctcaagtctctcctgaat |
8965121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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