View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17442_low_31 (Length: 240)
Name: NF17442_low_31
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17442_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8952625 - 8952831
Alignment:
| Q |
1 |
agaatatttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8952625 |
agaatatttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagta |
8952724 |
T |
|
| Q |
101 |
ctataatttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8952725 |
ctataatttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgc |
8952824 |
T |
|
| Q |
201 |
aacaagc |
207 |
Q |
| |
|
||||||| |
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| T |
8952825 |
aacaagc |
8952831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 8972329 - 8972135
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||| |
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| T |
8972329 |
tttgaggtgaagaaaatgatcaaaaaaatttcagggcatgttgattcttcaagtgttacaaatttgagtgaggtgttgatttctctatcaagtactataa |
8972230 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgca |
201 |
Q |
| |
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| T |
8972229 |
tttgtaggattgcttttgggagaagctatgagaatgatggaactgagaaaagtagatttcatgaaatgttgcatgagtttcaagctttgcttgca |
8972135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 8975720 - 8975914
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
8975720 |
tttgaggtgaagaaaatgatcaaaagaatttcagggcatgttgattcttcaagtgttacaaatttgagtgagttattgatttcgctatcaagtactataa |
8975819 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgca |
201 |
Q |
| |
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||||||| ||||||||||||| ||||||||| ||||| | || ||| | ||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
8975820 |
tttgtaggattgcttttgggagaagctatgaggatgaaggaactgaaagaagtaggtttcatggaatgttgcatgagtttcaagctttacttgca |
8975914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 9027472 - 9027666
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
9027472 |
tttgaggtgaagaaaatgatcaaaaaaatttcagggcatgctagttcttcaagtgttacaaatttgagtgagttattgatttcgctatcaagtactataa |
9027571 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgca |
201 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||| | || ||| | ||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
9027572 |
tttgtaggattgcttttgggagaagctatgaggatgaaggaactgaaagaagtaggtttcatggaatgttgcatgagtttcaagctttacttgca |
9027666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 9002391 - 9002201
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||| |||||||| ||||||| || || |||||||| |||| |
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| T |
9002391 |
tttgaggtgaagaaaatgataaaaaaaatttcagggcatgttagttcttcaagtgtttcaaatatgagtgagatattgatatctctttcaagtacgataa |
9002292 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgct |
197 |
Q |
| |
|
|||| || |||| |||||||| ||||||||||||||| | || ||||| ||||||||||| ||| |||| ||||||| |||||||||||| |
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| T |
9002291 |
tttgcaggattgtttttgggagaagctatgaagatgaaggaactgagagaagtaggtttcaaggaatgtttcatgagtgtcaagctttgct |
9002201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 8916561 - 8916425
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| ||||||| |||||||| ||||||||||||||||||| |||||| ||| ||||| ||||| |||| |
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| T |
8916561 |
tttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaattgttacaaatttgagtgagatattgacttctctctctagtacaataa |
8916462 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatga |
143 |
Q |
| |
|
||||||| |||||||| || | || ||||||||||| |
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|
| T |
8916461 |
tttgtaggattgctttcggtaggagttatgaagatga |
8916425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 8905717 - 8905581
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||| |||||| ||| ||||| ||||| |||| |
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|
| T |
8905717 |
tttgaggtgaagcaaatgataaaaaatatttctaatcatgctacttcttcaaatgttacaaatttgagtgagatattgacttctctctctagtacaataa |
8905618 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatga |
143 |
Q |
| |
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||||||| |||||||| || | || ||||||||||| |
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|
| T |
8905617 |
tttgtaggattgctttcggtaggagttatgaagatga |
8905581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 8930401 - 8930222
Alignment:
| Q |
7 |
tttgaggtgaagaaaatgatcgaaaaaatttcagggcatgctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataa |
106 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| ||||||| |||||||| ||||||||||||||||||| |||||| ||| || | ||||| || | |
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|
| T |
8930401 |
tttgaggtgaagcaaatgataaaaaatatttctaatcatgctgcttcttcaaatgttacaaatttgagtgagatattgacttctctatatagtacaatga |
8930302 |
T |
|
| Q |
107 |
tttgtagaattgcttttgggaaaagctatgaagatgatgaaattgagaagagtaggtttcatggattgttgcatgagttt |
186 |
Q |
| |
|
||||||| |||||||||||||| || || || || | | ||||||| ||||| || |||||| |||||||||||||| |
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|
| T |
8930301 |
tttgtaggattgcttttgggaagaggtacgaggaacaagggattgagaggagtaaattccatggaatgttgcatgagttt |
8930222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 9401362 - 9401227
Alignment:
| Q |
51 |
ttcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaaatt |
150 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |||||||||||| || ||||||||||| | | | |
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|
| T |
9401362 |
ttcttcagttgttacaaatttgagtgaattattaatttctctctcaagtaaaataatttgtagggttgcttttgggaggaggtatgaagatgaaggacta |
9401263 |
T |
|
| Q |
151 |
gagaagagtaggtttcatggattgttgcatgagttt |
186 |
Q |
| |
|
|||| |||| || |||||| |||||||||||||| |
|
|
| T |
9401262 |
gagagtagtaaattccatggaatgttgcatgagttt |
9401227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 20075715 - 20075639
Alignment:
| Q |
46 |
gctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataatttgtagaattgcttt |
122 |
Q |
| |
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|||| |||||||| ||||||||||||||||||| |||| | ||| || || ||||| ||||||||||| |||||||| |
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|
| T |
20075715 |
gctgcttcttcaattgttacaaatttgagtgagatattaacttctctttccagtacaataatttgtaggattgcttt |
20075639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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