View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17442_low_5 (Length: 454)

Name: NF17442_low_5
Description: NF17442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17442_low_5
NF17442_low_5
[»] chr8 (3 HSPs)
chr8 (59-236)||(392343-392520)
chr8 (59-236)||(7278087-7278261)
chr8 (184-233)||(3581333-3581382)
[»] chr5 (11 HSPs)
chr5 (59-236)||(35429940-35430117)
chr5 (59-236)||(35428357-35428535)
chr5 (59-233)||(41340951-41341125)
chr5 (59-236)||(7400502-7400678)
chr5 (89-240)||(13661623-13661774)
chr5 (65-236)||(18009108-18009276)
chr5 (65-236)||(7658883-7659052)
chr5 (97-236)||(30921690-30921825)
chr5 (10-55)||(7400330-7400375)
chr5 (10-55)||(35429769-35429814)
chr5 (10-55)||(41341251-41341296)
[»] chr7 (10 HSPs)
chr7 (65-236)||(5448902-5449073)
chr7 (65-236)||(5439892-5440063)
chr7 (65-236)||(15588695-15588863)
chr7 (65-233)||(15589829-15589995)
chr7 (65-122)||(5438899-5438956)
chr7 (10-55)||(5439715-5439760)
chr7 (65-122)||(5447909-5447966)
chr7 (10-55)||(5448725-5448770)
chr7 (10-48)||(5447730-5447768)
chr7 (10-55)||(15589649-15589694)
[»] chr6 (10 HSPs)
chr6 (67-236)||(14763871-14764040)
chr6 (67-236)||(14766448-14766617)
chr6 (59-236)||(21118464-21118637)
chr6 (59-236)||(32341995-32342170)
chr6 (59-162)||(21118746-21118849)
chr6 (129-228)||(20726687-20726783)
chr6 (10-55)||(14766269-14766314)
chr6 (10-50)||(21118289-21118329)
chr6 (13-50)||(14763716-14763753)
chr6 (10-46)||(32342305-32342341)
[»] chr3 (18 HSPs)
chr3 (59-236)||(38183140-38183317)
chr3 (60-241)||(1026709-1026883)
chr3 (65-232)||(3371323-3371487)
chr3 (59-157)||(17731101-17731199)
chr3 (59-157)||(19032332-19032430)
chr3 (180-236)||(3372280-3372336)
chr3 (181-236)||(16869899-16869953)
chr3 (177-236)||(44081192-44081251)
chr3 (10-55)||(43979431-43979476)
chr3 (10-50)||(3371630-3371670)
chr3 (10-55)||(17730928-17730974)
chr3 (10-55)||(19032159-19032205)
chr3 (70-165)||(21344727-21344826)
chr3 (71-232)||(49582523-49582680)
chr3 (205-241)||(1011208-1011244)
chr3 (10-50)||(40195750-40195790)
chr3 (12-55)||(1027011-1027054)
chr3 (10-48)||(38183030-38183068)
[»] chr1 (9 HSPs)
chr1 (59-236)||(52022035-52022211)
chr1 (65-236)||(6139726-6139897)
chr1 (59-236)||(6138120-6138282)
chr1 (65-236)||(2595344-2595510)
chr1 (89-149)||(5397342-5397402)
chr1 (10-55)||(6138408-6138453)
chr1 (202-236)||(43834911-43834945)
chr1 (66-136)||(43834965-43835035)
chr1 (14-46)||(52022349-52022381)
[»] chr4 (10 HSPs)
chr4 (79-236)||(45676672-45676828)
chr4 (59-233)||(31322490-31322661)
chr4 (174-236)||(10550136-10550198)
chr4 (59-236)||(31327113-31327288)
chr4 (57-233)||(41848377-41848551)
chr4 (59-139)||(14508733-14508813)
chr4 (59-122)||(10550051-10550114)
chr4 (10-46)||(31322837-31322873)
chr4 (14-48)||(14508946-14508980)
chr4 (10-47)||(4528729-4528766)
[»] chr2 (6 HSPs)
chr2 (59-236)||(4660143-4660316)
chr2 (111-236)||(31073770-31073892)
chr2 (88-211)||(34225076-34225199)
chr2 (92-236)||(33301080-33301221)
chr2 (59-155)||(20594608-20594704)
chr2 (13-50)||(7371844-7371881)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 392343 - 392520
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| ||||| || | || ||||||||||||||||| || ||||||||| |||| ||||||||||| ||||||||||||||||||    
T  392343 tcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttcactaaactaag 392442  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  392443 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 392520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 7278087 - 7278261
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||||| ||||||||||  ||||| |||||| |||   ||||| |||| ||||||||| | ||||||    
T  7278087 tcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttcaccacactaag 7278186  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||| ||||    |  |||||| | |||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  7278187 cgatgtaggac---ttttccaatagcaaatattttttaacctccttatttatttaagaaacttgacaatcaaacccaa 7278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 3581382 - 3581333
Alignment:
Q  184 ctaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 233  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3581382 ctaatattttttaacctccttctttatttaagaaacttgacaatcaaacc 3581333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 35429940 - 35430117
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||| |||  ||||||||||| ||||||||||||| ||||    
T  35429940 tcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttcactaaaataag 35430039  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35430040 cgatgtcggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 35430117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 35428357 - 35428535
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaatta---ggttcaatatgtagcattggtcttccctttgcttcactaaact 155  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||   |||||||||| |||| ||||||||||| ||||||||||||| |    
T  35428357 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgcttcactaaaat 35428456  T
Q  156 aagcgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35428457 aagcgatttgggacataatcaccaataactaatattttctaacctccttctttattca--aaacttgacaatcaaacccaa 35428535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 41341125 - 41340951
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || | ||||||||||| ||||||||||||||||||    
T  41341125 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttcactaaactaag 41341026  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 233  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  41341025 cgatgtgggacataaccaccaataactaatattttataacctccttctttattcaagaaatttgacaattaaacc 41340951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 7400502 - 7400678
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||| |||  ||||||||||| ||||| ||||||||||||    
T  7400502 tcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatagtcttggtcttccccttgctccactaaactaag 7400601  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  7400602 cgatgtcggacataatcaccaataactaatatttt-taacctctttctttattcaagaaacttgacaatcaaacccaa 7400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 13661774 - 13661623
Alignment:
Q  89 gtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaat 188  Q
    |||||||| | |||||||||   | ||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  13661774 gtgcatctgataacaaagaaccaaagttcaatatataacattggtcttccccttgcttcactaaactaagcgatgtggaacataatcactaataactaat 13661675  T
Q  189 attttctaacctccttctttattcaagaaacttgacaatcaaacccaataca 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13661674 attttttaacctccttctttattcaagaaacttgacaatcaaacccaataca 13661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 18009276 - 18009108
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||| ||||||| |||||||| ||||||| ||||||||| |||  ||||| |||||| || | ||| |||| || ||| ||||| | |||||||||  |    
T  18009276 ataagtttaaagtgctactgactggtgcatttaaaaacaacgaatctaggtccaatatataaccttgatctttccgttgtttcaccacactaagcgactt 18009177  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||| |   | |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  18009176 gggactt---ctccaatagctaatattttttaacctccttctttatttaagaaacttgacaatcaaacccaa 18009108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 7659052 - 7658883
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||||||||||| ||||| || ||| ||||| |||||||||||  ||  |||||||| ||||||||||||||   ||||| ||| | ||||||||||||    
T  7659052 ataagcttaaagtgctactaactggtacatctgaaaacaaagaacctaaattcaatatatagcattggtcttcgtcttgctccaccacactaagcgatgt 7658953  T
Q  165 gggacataatcaccaataactaatattttctaacctcc-ttctttattcaagaaacttgacaatcaaacccaa 236  Q
     ||||    || ||||||||||||||||| |||||||| ||| ||||| || |||||||||||||||||||||    
T  7658952 aggac---ttctccaataactaatattttttaacctcctttccttatttaaaaaacttgacaatcaaacccaa 7658883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 30921690 - 30921825
Alignment:
Q  97 aaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttcta 196  Q
    ||||||||||||  || || |||||| || ||||||||||||||||| || || | |||||| |||||||||| |   | |||||| ||||| |||| ||    
T  30921690 aaaaacaaagaacctacgtccaatatataacattggtcttccctttgttttaccacactaagtgatgtgggactt---ctccaatatctaatgtttt-ta 30921785  T
Q  197 acctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30921786 acctccttctttattcaagaaacttgacaatcaaacccaa 30921825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 7400330 - 7400375
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||| |||||||||| ||||| ||||||||||||| ||||    
T  7400330 aagaatataatgtggaaactctaaaacgggagaaaaaaccatgacc 7400375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 35429769 - 35429814
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||    
T  35429769 aagaatataacgtggaaactccaaaactagaggaaaaaccacgacc 35429814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 41341296 - 41341251
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    ||||||||||| |||||||||||||||| ||| |||||||| ||||    
T  41341296 aagaatataacatggaaactccaaaaccagaggaaaaaccatgacc 41341251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 5448902 - 5449073
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  5448902 ataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcgatgt 5449001  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    || ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  5449002 ggaacataatcaccaatagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaa 5449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 5439892 - 5440063
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  5439892 ataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcgatgt 5439991  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    || ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  5439992 ggaacataatcaccaatagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaa 5440063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 15588695 - 15588863
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    |||||||||| || |||||||| |||||||||||||||||||||  ||   ||||||| |||| ||||||||||  ||||||||| |||||||| |||||    
T  15588695 ataagcttaacgtgctactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttcaccaaactaagtgatgt 15588794  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||| |   | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  15588795 gggactt---ctccaataactaatattttgtaacctccttctttattcaagaaacttgacaatcatacccaa 15588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 15589829 - 15589995
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    |||||||||| || ||||||||  ||||||||||| ||||||||  ||| |||||||| |||| ||||||||||| ||||||||| |||||||| || ||    
T  15589829 ataagcttaatgtgctactgacctgtgcatctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttcaccaaactaagtgacgt 15589928  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 233  Q
    | ||| |  || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  15589929 gtgacttc-tc-ccaataactaatattttttaacctccttctttattcaagaaatttgacaatcaaacc 15589995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 5438899 - 5438956
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 122  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| || |||||||||    
T  5438899 ataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactatgttcaatat 5438956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 5439715 - 5439760
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5439715 aagaatataacgtggaaactccaaaaccgtagaaaaaaccatgacc 5439760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 5447909 - 5447966
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 122  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||||| || |||||||||    
T  5447909 ataagcttaaagtgctattgactggtgcatctaagaacaaagaaactatgttcaatat 5447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 5448725 - 5448770
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||    
T  5448725 aagaatataatgtggaaactccaaaaccgtagaaaaaaccatgacc 5448770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 5447730 - 5447768
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaac 48  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  5447730 aagaatataatgtggaaactctaaaaccggagaaaaaac 5447768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15589649 - 15589694
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||    
T  15589649 aagaatataacttggaaactccaaaaccgaagaaaaacccatgacc 15589694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 14763871 - 14764040
Alignment:
Q  67 aagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgg 166  Q
    ||||||||||| |||||||| ||| |||||||||||||||||| ||| |||||||  |||| ||||||||||| ||||||||||||||||||||||||||    
T  14763871 aagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaatagctttggtcttccccttgcttcactaaactaagcgatgtgg 14763970  T
Q  167 gacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14763971 gacataatcaccaataactaatattttctaacctccttctttattcaacaaacttgacaatcaaacccaa 14764040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 14766448 - 14766617
Alignment:
Q  67 aagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgg 166  Q
    ||||||||||| ||| ||||  ||||||||||||||||| ||| |||||||||||| |||| ||||||||| | |||||||||||||||||| ||||| |    
T  14766448 aagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttcactaaactaagtgatgttg 14766547  T
Q  167 gacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14766548 gacataatcaccaataactaatattttctaacctccttgtttattcaacaaacttgacaatcaaacccaa 14766617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 21118464 - 21118637
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| |||| |||| |||||  ||||||||||||||||||    
T  21118464 tcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttcactaaactaag 21118563  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    ||||| |||||| |||||||||||||||||    
T  21118564 cgatgtgggacataatcaccaataactaatatttttttacctcc----ttatttaagaaaattgacaatcaaacccaa 21118637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 32342170 - 32341995
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| |||||||||||||  ||||||| ||||||||||||||||||||| |||  |||||||| |||| ||||||||||||||||||||| |||||||     
T  32342170 tcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttcaccaaactaac 32342071  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattc-aagaaacttgacaatcaaacccaa 236  Q
    ||||||| |||    || ||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||    
T  32342070 cgatgtgagac---gtctccaataattaatattttttaacctctttctttattcaaagaaacttgacaatcaaatccaa 32341995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 21118746 - 21118849
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |||||  ||||||||||||||||||    
T  21118746 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttcactaaactaag 21118845  T
Q  159 cgat 162  Q
    ||||    
T  21118846 cgat 21118849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 20726783 - 20726687
Alignment:
Q  129 ttggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatc 228  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||  |||   |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20726783 ttggtcttcctcttgcttcaccaaactaagcaatgtgggacatcttca---ataactaatattttttaacctccttctttattcaagaaacttgacaatc 20726687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14766269 - 14766314
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  14766269 aagaatataacgtggaaactccaaaatcggagaaaaaaccacgacc 14766314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 21118289 - 21118329
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaacca 50  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  21118289 aagaatataacgtggaaactccaaaatcgaagaaaaaacca 21118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 14763716 - 14763753
Alignment:
Q  13 aatataacgtggaaactccaaaaccggagaaaaaacca 50  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  14763716 aatataacatggaaactccaaaaccgaagaaaaaacca 14763753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 32342341 - 32342305
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaa 46  Q
    ||||||||||||||||||||||||||  |||||||||    
T  32342341 aagaatataacgtggaaactccaaaattggagaaaaa 32342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 38183140 - 38183317
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |||| ||||||||| | ||||||||||||||||||    
T  38183140 tcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatatatagccttggtcttcaccttgcttcactaaactaag 38183239  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38183240 cgatgtggaatatagtcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 38183317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 1026883 - 1026709
Alignment:
Q  60 cagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagc 159  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||||||||  || |||| |||| |||| ||||| ||||| ||||||||||||||||||     
T  1026883 cagatataagcttatagtactattgactggtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttcactaaactaag- 1026785  T
Q  160 gatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaatacat 241  Q
     ||||| |||    || ||||||||||||||||| | |||||   |||||||||||||||| ||||||||||||||| ||||    
T  1026784 aatgtgagac---ttctccaataactaatattttttcacctc---ctttattcaagaaactagacaatcaaacccaacacat 1026709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 3371487 - 3371323
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||| ||||||| ||| |||| | ||||||||||||||| |||  |||||| ||||| |||| ||||||||||||||||||||| |||||||||||| |    
T  3371487 ataagtttaaagttctattgactgatgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttcaccaaactaagcgatat 3371388  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaac 232  Q
    | |||    || | ||||||||||||||| ||| ||| || ||||||||||||| |||||||||||||    
T  3371387 gagac---ttctctaataactaatattttttaaactctttttttattcaagaaatttgacaatcaaac 3371323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 17731101 - 17731199
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaa 157  Q
    ||||| ||||||||||||| |||||||| ||||||||||| || ||||||| |||||||||||| |||| |||| |||||| |||||||||||||||||    
T  17731101 tcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttcactaaactaa 17731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 19032332 - 19032430
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaa 157  Q
    ||||| ||||||||||||| |||||||| ||||||||||| || ||||||| |||||||||||| |||| |||| |||||| |||||||||||||||||    
T  19032332 tcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttcactaaactaa 19032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 3372336 - 3372280
Alignment:
Q  180 ataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3372336 ataactaatattttttaacctccttctttattcaagaaacttgacaatcaaatccaa 3372280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 16869899 - 16869953
Alignment:
Q  181 taactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  16869899 taactaatatttt-taacccccttctttattcaagaaacttaacaatcaaacccaa 16869953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 44081251 - 44081192
Alignment:
Q  177 ccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||    
T  44081251 ccaagaactaatatttttttacctccttctttattcaagaaccttgacaattaaacccaa 44081192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 43979476 - 43979431
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  43979476 aagaatataacgtggaaactccaaaactggagaaaaaaccacgacc 43979431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3371670 - 3371630
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaacca 50  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  3371670 aagaatataacgaggaaactccaaaaccggagaaaaaacca 3371630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 17730928 - 17730974
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccgga-gaaaaaaccaggacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17730928 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgacc 17730974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 19032159 - 19032205
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccgga-gaaaaaaccaggacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  19032159 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgacc 19032205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 21344727 - 21344826
Alignment:
Q  70 cttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat----gtagcattggtcttccctttgcttcactaaactaagcgatgtg 165  Q
    |||||||| |||||||  |||||||||||||||||| ||  ||||||||||||     |||||||||||||||  ||| ||||| ||||||||| |||||    
T  21344727 cttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatatatagatagcattggtcttcctcttgattcaccaaactaagcaatgtg 21344826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 49582680 - 49582523
Alignment:
Q  71 ttaaagtactactgacgggtgcatctaaaaacaaagaaattaggt-tcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggac 169  Q
    ||||||| ||||||||   ||||||||||||||||||| |||||| |  |||| || ||||||||||||| ||||||||  | |||||  |||||| ||     
T  49582680 ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaacattggtcttccccttgcttcatcacactaaatgatgtgaga- 49582582  T
Q  170 ataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaac 232  Q
        ||  ||||| ||| |||||| ||||||||||||||||| |||||  |||||||||||||    
T  49582581 --tttcttcaatagctattattttttaacctccttctttatttaagaa--ttgacaatcaaac 49582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 1011244 - 1011208
Alignment:
Q  205 ctttattcaagaaacttgacaatcaaacccaatacat 241  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1011244 ctttattcaagaaacttgacaatcaaacccaacacat 1011208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 40195790 - 40195750
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaacca 50  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  40195790 aagaatataacgtggaaattccaaaaccagagaaaaaacca 40195750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 1027054 - 1027011
Alignment:
Q  12 gaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||    
T  1027054 gaatataacgtgtaaactccaaaaccagagaaaaaaccacgacc 1027011  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 38183030 - 38183068
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaac 48  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  38183030 aagaatataacgtggaaactccaaaaccgaagacaaaac 38183068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 52022211 - 52022035
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| || |||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||| || |||||||||||||||    
T  52022211 tcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccccttacttcactaaactaag 52022112  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  52022111 caatgtgggacataatcaccaataactaatatttt-taacctccttccttattcaagaaacttgacaatcaaacccaa 52022035  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 6139897 - 6139726
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    |||||||||||||  || |||| |||||||||||||||||||||| || ||||||||| |||| ||||||||||| |||||||||||||||||||| |||    
T  6139897 ataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttcactaaactaagcggtgt 6139798  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    || ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  6139797 ggaacataatcatcaataactaattttttctaacctccttctttattcaaaaaacttgacaatcaaacccaa 6139726  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 6138282 - 6138120
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||| |||  |||||||               |||| |||    
T  6138282 tcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaaactaggttcaatatatagtcttggtct---------------aaacaaag 6138198  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6138197 cgatgtgggatataatcaccaataactaattttttctaacctccttctttattcaagaaacttgacaatcaaacccaa 6138120  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 2595344 - 2595510
Alignment:
Q  65 ataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgt 164  Q
    ||||||| |||| ||||||||||  |||||||||||||||||||  || ||  ||||| |||  | ||||||||| || |||||| | |||||| |||||    
T  2595344 ataagctcaaagcactactgacg--tgcatctaaaaacaaagaacctaagtctaatatatagtctaggtcttccccttacttcaccacactaagtgatgt 2595441  T
Q  165 gggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
     ||||     | |||||| |||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  2595442 aggactc---ctccaatagctaatactttttaacctccttctttatataagaaacttgacaatcaaacccaa 2595510  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 5397402 - 5397342
Alignment:
Q  89 gtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcac 149  Q
    ||||||||||||||||||||  |||||  ||||| |||| |||||||||||||||||||||    
T  5397402 gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccctttgcttcac 5397342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 6138453 - 6138408
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaaccaggacc 55  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||    
T  6138453 aagaatataacgtggaaactccaaaactagagaaaaaaccacgacc 6138408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 43834945 - 43834911
Alignment:
Q  202 cttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||||||||| ||||||||||||||||||||||||    
T  43834945 cttctttatttaagaaacttgacaatcaaacccaa 43834911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 43835035 - 43834965
Alignment:
Q  66 taagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtctt 136  Q
    |||| ||||||| |||||||| | ||||||| ||||| ||||| ||||||||||||| |||| || |||||    
T  43835035 taagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaatatatagccttagtctt 43834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 52022381 - 52022349
Alignment:
Q  14 atataacgtggaaactccaaaaccggagaaaaa 46  Q
    ||||||||||||||||||||||||| |||||||    
T  52022381 atataacgtggaaactccaaaaccgaagaaaaa 52022349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 45676672 - 45676828
Alignment:
Q  79 ctactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcacc 178  Q
    |||||| | |||||||||||||||||||||  |||||||||||| |||  || | ||| || |||||||||||||||||||||||| |||||||||||||    
T  45676672 ctactggctggtgcatctaaaaacaaagaacctaggttcaatatatagtcttagcctttcccttgcttcactaaactaagcgatgtaggacataatcacc 45676771  T
Q  179 aataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45676772 aatagctaatatttt-taacctccttctttattcaagaaacttgacaatcaaacccaa 45676828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 31322661 - 31322490
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| ||||||||||||| | | |||  |||||||||||||||||||||  ||||| |||||| || | ||||||||||  || |||||| | ||||||    
T  31322661 tcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcctcttacttcaccacactaag 31322562  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 233  Q
      ||||| ||| |   | |||||| ||||||||||  |||||||||||||| | |||||||||||||||||||||    
T  31322561 taatgtgagactt---ctccaatatctaatatttttaaacctccttctttaattaagaaacttgacaatcaaacc 31322490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 10550136 - 10550198
Alignment:
Q  174 tcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  10550136 tcaccaataactaatgttttttaacctcattctttattcaagaaacttgacaatcaaacccaa 10550198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 31327288 - 31327113
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| |||| |||||||| ||||| || |||| || |||||| | ||||  |||||| ||||| ||||||||||||| |||||||||||| | ||||||    
T  31327288 tcagatataaacttaaagtgctacttactggtgtatataaaaatagagaacctaggttgaatatatagcattggtctttcctttgcttcaccacactaag 31327189  T
Q  159 cgatgtgggacataatcaccaataactaata-ttttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    | ||| |||||    || ||||||  ||||| |||| ||| |||||| |||||| |||||| |||||||||||||||||    
T  31327188 caatgcgggac---ttctccaataggtaatatttttttaatctccttttttatttaagaaatttgacaatcaaacccaa 31327113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 41848377 - 41848551
Alignment:
Q  57 aatcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtctt-ccctttgcttcactaaact 155  Q
    ||||||| ||||||| ||| | |||||||| | |||||||||||||||||||   | ||  ||||| |||||||||| || ||| ||||||||| | |||    
T  41848377 aatcagatataagctaaaaatgctactgactgatgcatctaaaaacaaagaaccaaagtcgaatatatagcattggtttttccccttgcttcaccacact 41848476  T
Q  156 aagcgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 233  Q
    ||||| |||   || |   | |||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  41848477 aagcggtgtttaactt---ctccaatagctaatattttttaacctccttctttatttaagaaacttaacaatcaaacc 41848551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 14508813 - 14508733
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccc 139  Q
    ||||| ||||||||||||| |||||||| ||| ||||||||||| |||||  |||||||||||| |||| |||||||||||    
T  14508813 tcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttccc 14508733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 10550051 - 10550114
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatat 122  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||||||  ||||||||||||    
T  10550051 tcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttcaatat 10550114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 31322873 - 31322837
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaa 46  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31322873 aagaatataacgtggaaactccaaaatcggagaaaaa 31322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 14508980 - 14508946
Alignment:
Q  14 atataacgtggaaactccaaaaccggagaaaaaac 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  14508980 atataacgtggaaactccaaaaccagagaaaaaac 14508946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 4528766 - 4528729
Alignment:
Q  10 aagaatataacgtggaaactccaaaaccggagaaaaaa 47  Q
    |||||||||||||||||||| | |||||||||||||||    
T  4528766 aagaatataacgtggaaacttcgaaaccggagaaaaaa 4528729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 4660143 - 4660316
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaag 158  Q
    ||||| |||| |||||||| |||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  4660143 tcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatagcattggtcttccccttgcttcaccaaactaag 4660241  T
Q  159 cgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||||||| ||     || |||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||    
T  4660242 cgatgtgaga---tttctccaatagctaatatttttcaatctccttctttatttaagaaacttgacaatcaaacccaa 4660316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 31073770 - 31073892
Alignment:
Q  111 taggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttctttat 210  Q
    |||||||||||| |||||||| ||||||| | ||||||| ||||||| ||||||||||  |   | ||||||||||||||||| | ||||||||||||||    
T  31073770 taggttcaatatatagcattgatcttcccctcgcttcaccaaactaaccgatgtgggattt---ctccaataactaatattttttcacctccttctttat 31073866  T
Q  211 tcaagaaacttgacaatcaaacccaa 236  Q
    ||||||||||||||||||||||||||    
T  31073867 tcaagaaacttgacaatcaaacccaa 31073892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 34225076 - 34225199
Alignment:
Q  88 ggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaa 187  Q
    ||||||||||||||||||||| ||||||| ||||| |||  ||| | ||||| ||  || |||||| |||||||||| ||||||||||| ||||||||||    
T  34225076 ggtgcatctaaaaacaaagaatttaggtttaatatatagttttgattttccccttattttactaaattaagcgatgtaggacataatcatcaataactaa 34225175  T
Q  188 tattttctaacctccttctttatt 211  Q
    |||||| ||||||  |||||||||    
T  34225176 tattttttaaccttattctttatt 34225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 33301080 - 33301221
Alignment:
Q  92 catctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaactaagcgatgtgggacataatcaccaataactaatatt 191  Q
    |||||||||||||||||  |  ||||||||| |||| ||||||||||| || |||||| | |||||| ||| || ||| |   | | |||| ||||||||    
T  33301080 catctaaaaacaaagaacatgagttcaatatatagccttggtcttccccttacttcaccacactaagtgatatgtgactt---ctcaaatagctaatatt 33301176  T
Q  192 ttctaacctccttctttattcaagaaacttgacaatcaaacccaa 236  Q
    ||  ||||||||| |||||| ||||||||||||| ||||||||||    
T  33301177 tttcaacctccttatttatttaagaaacttgacattcaaacccaa 33301221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 20594704 - 20594608
Alignment:
Q  59 tcagagataagcttaaagtactactgacgggtgcatctaaaaacaaagaaattaggttcaatatgtagcattggtcttccctttgcttcactaaact 155  Q
    ||||| ||||||||| |||  || |||| |||||||||||||| ||||||  |||||||||||| |||  ||||||||||| ||||||||| |||||    
T  20594704 tcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttcaccaaact 20594608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 7371881 - 7371844
Alignment:
Q  13 aatataacgtggaaactccaaaaccggagaaaaaacca 50  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7371881 aatataacgtggaaactctaaaaccggagaaaaaacca 7371844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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